RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where bioproject = "PRJNA870096" and clusterLCA_curated = "Zebrafish jaw picornavirus"

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tax_genus_NTorNR 4

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw picornavirus · 5 ✖

bioproject 1

  • PRJNA870096 · 5 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8408 8408 PRJNA870096_CONTIG_35491|Salivirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA870096_CONTIG_35491|Salivirus PRJNA870096_CONTIG_35491 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA870096 35491 299 3.023438 9.04007962 Salivirus 688449 Viruses Viruses 74.3 6.01e-13 Salivirus Non-phage NR PRJNA870096_S_NODE_35491_length_299_cov_3.023438_g33827_i0   QJX58422.1 polyprotein [Salivirus A] QJX58422.1 1330524 g33827 i0 44.3 4.695652174 97 52 95.3 2 299 15 2256 2352 1404 74.7 0.994645248 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Salivirus Salivirus aklasse Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Salivirus     Viruses   Viruses   74.3   6.01e-13
8418 8418 PRJNA870096_CONTIG_55079|Bat_kobuvirus_TM|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA870096_CONTIG_55079|Bat_kobuvirus_TM PRJNA870096_CONTIG_55079 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA870096 55079 237 0.953608 2.26005096 Bat kobuvirus TM 3128441 Viruses Viruses 104.0 2.33e-24 Bat kobuvirus TM Non-phage NR PRJNA870096_S_NODE_55079_length_237_cov_0.953608_g53415_i0   ADI48258.1 3D, partial [Bat kobuvirus TM003k] ADI48258.1 795373 g53415 i0 57.1 0.974683544 77 32 97.5 1 2 232 121 196 231 104.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Bat kobuvirus TM003k Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Bat kobuvirus TM     Viruses   Viruses   104.0   2.33e-24
8419 8419 PRJNA870096_CONTIG_64036|Pacific_black_duck_sicinivirus-like_virus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA870096_CONTIG_64036|Pacific_black_duck_sicinivirus-like_virus PRJNA870096_CONTIG_64036 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA870096 64036 219 1.363636 2.98636284 Pacific black duck sicinivirus-like virus 2759415 Viruses Viruses 52.0 1.56e-05 Pacific black duck sicinivirus-like virus Non-phage NR PRJNA870096_S_NODE_64036_length_219_cov_1.363636_g62372_i0   QMI57975.1 polyprotein, partial [Pacific black duck sicinivirus-like virus] QMI57975.1 2759415 g62372 i0 52.3 2.835616438 44 21 60.3 0 85 216 1029 1072 621 52.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Sicinivirus Pacific black duck sicinivirus-like virus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Pacific black duck sicinivirus-like virus     Viruses   Viruses   52.0   1.56e-05
8420 8420 PRJNA870096_CONTIG_91748|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA870096_CONTIG_91748|Kobuvirus PRJNA870096_CONTIG_91748 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA870096 91748 184 1.021277 1.87914968 Kobuvirus 194960 Viruses Viruses 43.5 0.00391 Kobuvirus Non-phage NR PRJNA870096_S_NODE_91748_length_184_cov_1.021277_g90084_i0   NP_859022.1 2A [Kobuvirus bejaponia] NP_859022.1 194965 g90084 i0 36.4 3.456521739 55 34 89.7 1 183 19 51 104 636 43.5 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus bejaponia Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus     Viruses   Viruses   43.5   0.00391
8422 8422 PRJNA870096_CONTIG_137529|Avian_megrivirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA870096_CONTIG_137529|Avian_megrivirus PRJNA870096_CONTIG_137529 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA870096 137529 153 0.872727 1.33527231 Avian megrivirus 2986276 Viruses Viruses 61.2 3.33e-09 Avian megrivirus Non-phage NR PRJNA870096_S_NODE_137529_length_153_cov_0.872727_g135865_i0   WAB24476.1 polyprotein [Avian megrivirus] WAB24476.1 2986276 g135865 i0 60.0 0.980392157 50 20 98.0 0 1 150 2561 2610 150 61.2 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Megrivirus Avian megrivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Avian megrivirus     Viruses   Viruses   61.2   3.33e-09

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;