RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where bioproject = "PRJNA846701" and clusterLCA_curated = "Danio blood picornavirus/Zebrafish picornavirus 2"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Danio blood picornavirus/Zebrafish picornavirus 2 · 2 ✖

bioproject 1

  • PRJNA846701 · 2 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
1858 1858 PRJNA846701_CONTIG_1|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA846701_CONTIG_1|Zebrafish_picornavirus_2 PRJNA846701_CONTIG_1 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA846701 1 4791 8.220582 393.8480836 Zebrafish picornavirus 2 3063761 Viruses Viruses 2898.0 0.0 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA846701_P_NODE_1_length_4791_cov_8.220582_g0_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g0 i0 97.796 0.689000209 1679 35 69.0 2 3114 4791 5329 7006 3301 2898.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Zebrafish picornavirus 2 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 2898.0 1930.0 0.0 0.0
2039 2039 PRJNA846701_CONTIG_68|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA846701_CONTIG_68|Zebrafish_picornavirus_2 PRJNA846701_CONTIG_68 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA846701 68 2319 3.509692 81.38975748 Zebrafish picornavirus 2 3063761 Viruses Viruses 1151.0 0.0 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA846701_P_NODE_68_length_2319_cov_3.509692_g54_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g54 i0 99.216 0.581285037 638 5 58.0 0 164 801 2 639 1348 1151.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Wuhan sharpbelly picornavirus 1 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 1151.0 765.0 0.0 1.15e-249

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;