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viruses_fish_associated_curated

5 rows where bioproject = "PRJNA800053" and tax_species_NTorNR = "Fish-associated parvo-like hybrid virus"

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tax_species_NTorNR 1

  • Fish-associated parvo-like hybrid virus · 5 ✖

tax_family_NTorNR 1

bioproject 1

  • PRJNA800053 · 5 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9785 9785 PRJNA800053_CONTIG_926|Fish-associated_parvo-like_hybrid_virus|CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_926|Fish-associated_parvo-like_hybrid_virus PRJNA800053_CONTIG_926 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER1_Fish-associated_parvo-like_hybrid_virus|21|14 MT138265_1_MAG_Nicoomyvirus_lizumae_isolate_par077par1_genomic_sequence 21 14 PRJNA800053 926 813 5.85 47.5605 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 1469.0 0.0 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_926_length_813_cov_5.850000_g799_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g799 i0 99.262 8.18696187 813 6 100.0 0 1 813 961 1773 6656 1469.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Parvo-like hybrid virus UC4 gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 1469.0 530.0 0.0 8.689999999999999e-188
9962 9962 PRJNA800053_CONTIG_5510|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_5510|Fish-associated_parvo-like_hybrid_virus PRJNA800053_CONTIG_5510 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA800053 5510 390 2.596215 10.1252385 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 472.0 2.41e-128 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_5510_length_390_cov_2.596215_g5347_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g5347 i0 98.864 1.987179487 264 3 100.0 0 1 264 956 693 775 472.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Grus japonensis parvo-like hybrid virus gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 472.0 68.2 2.41e-128 2.07e-10
9963 9963 PRJNA800053_CONTIG_10244|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_10244|Fish-associated_parvo-like_hybrid_virus PRJNA800053_CONTIG_10244 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA800053 10244 305 1.413793 4.31206865 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 564.0 2.95e-156 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_10244_length_305_cov_1.413793_g10080_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g10080 i0 100.0 1.0 305 0 100.0 0 1 305 3114 2810 305 564.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 564.0 171.0 2.95e-156 3.52e-50
9964 9964 PRJNA800053_CONTIG_10647|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_10647|Fish-associated_parvo-like_hybrid_virus PRJNA800053_CONTIG_10647 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA800053 10647 300 1.933921 5.801763 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 457.0 5.06e-124 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_10647_length_300_cov_1.933921_g10483_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g10483 i0 94.295 0.993333333 298 17 99.0 0 1 298 2815 2518 298 457.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 457.0 207.0 5.06e-124 2.3200000000000002e-64
9969 9969 PRJNA800053_CONTIG_24906|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_24906|Fish-associated_parvo-like_hybrid_virus PRJNA800053_CONTIG_24906 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA800053 24906 226 3.673203 8.30143878 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 298.0 2.34e-76 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_24906_length_226_cov_3.673203_g24742_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g24742 i0 90.95 0.977876106 221 20 98.0 0 4 224 2508 2288 221 298.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 298.0 147.0 2.34e-76 2.23e-41

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;