RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

2 rows where bioproject = "PRJNA800053" and clusterLCA_curated = "Psittaciform aveparvovirus"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Psittaciform aveparvovirus · 2 ✖

bioproject 1

  • PRJNA800053 · 2 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10043 10043 PRJNA800053_CONTIG_21839|Psittaciform_aveparvovirus|CLUSTER1_Psittaciform_aveparvovirus|12|7 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA800053_CONTIG_21839|Psittaciform_aveparvovirus PRJNA800053_CONTIG_21839 Psittaciform aveparvovirus 19 12 2 CLUSTER1_Psittaciform_aveparvovirus|12|7 OP577480_1_Psittaciform_aveparvovirus_strain_OBP1_FE1_49_2021_partial_genome 12 7 PRJNA800053 21839 244 0.900585 2.1974274 Psittaciform aveparvovirus 3042447 Viruses Viruses 329.0 9.080000000000001e-86 Psittaciform aveparvovirus Non-phage NTclustered PRJNA800053_P_NODE_21839_length_244_cov_0.900585_g21675_i0   Psittaciform aveparvovirus strain OBP1/FE1/49/2021, partial genome gi|2496529060|gb|OP577480.1| 3042447 g21675 i0 91.322 0.991803279 242 19 99.0 2 4 244 1965 2205 242 329.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittaciform aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus Psittaciform aveparvovirus Psittaciform aveparvovirus gi|2496529060|gb|OP577480.1| Viruses Viruses Viruses Viruses 329.0 158.0 9.080000000000001e-86 2.3e-45
10068 10068 PRJNA800053_CONTIG_7218|parvo-like_hybrid_virus|CLUSTER2_Psittaciform_aveparvovirus|11|8 Psittaciform aveparvovirus Endogenous or not fish-associated PRJNA800053_CONTIG_7218|parvo-like_hybrid_virus PRJNA800053_CONTIG_7218 Psittaciform aveparvovirus 19 12 2 CLUSTER2_Psittaciform_aveparvovirus|11|8 PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0|Psittaciform_aveparvovirus|NTclustered|0|NA 11 8 PRJNA800053 7218 351 1.097122 3.85089822 parvo-like hybrid virus 3367306 Viruses Viruses 436.0 7.8400000000000005e-118 parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_7218_length_351_cov_1.097122_g7054_i0   Parvo-like hybrid virus isolate SpinColumn05, partial genome gi|2814138511|gb|PQ313120.1| 3367306 g7054 i0 99.174 2.01994302 242 2 69.0 0 109 350 2881 2640 709 436.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus parvo-like hybrid virus Phoenicopteridae parvo-like hybrid virus gi|2814138511|gb|PQ313120.1| Viruses Viruses Viruses Viruses 436.0 160.0 7.8400000000000005e-118 2.37e-44

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;