RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA800053" and clusterLCA_curated = "Luscinia sibilans parvo-like hybrid virus"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Luscinia sibilans parvo-like hybrid virus · 3 ✖

bioproject 1

  • PRJNA800053 · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10139 10139 PRJNA800053_CONTIG_21524|Fish-associated_parvo-like_virus|CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 Luscinia sibilans parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_21524|Fish-associated_parvo-like_virus PRJNA800053_CONTIG_21524 Luscinia sibilans parvo-like hybrid virus 8 5 4 CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 OP933679_1_MAG_Fish_associated_parvo_like_virus_isolate_fi099par1_genomic_sequence_sequence 7 3 PRJNA800053 21524 244 2.146199 5.23672556 Fish-associated parvo-like virus 3003969 Viruses Viruses 429.0 8.699999999999999e-116 Fish-associated parvo-like virus Non-phage NTclustered PRJNA800053_P_NODE_21524_length_244_cov_2.146199_g21360_i0   MAG: Fish-associated parvo-like virus isolate fi099par1 genomic sequence, sequence gi|2416706441|gb|OP933679.1| 3003969 g21360 i0 99.16 1.950819672 238 2 98.0 0 4 241 1027 790 476 429.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus Fish-associated parvo-like virus parvo-like hybrid virus gi|2416706441|gb|OP933679.1| Viruses Viruses Viruses Viruses 429.0 140.0 8.699999999999999e-116 1.06e-37
10140 10140 PRJNA800053_CONTIG_24367|parvo-like_hybrid_virus|CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 Luscinia sibilans parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_24367|parvo-like_hybrid_virus PRJNA800053_CONTIG_24367 Luscinia sibilans parvo-like hybrid virus 8 5 4 CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 OP933679_1_MAG_Fish_associated_parvo_like_virus_isolate_fi099par1_genomic_sequence_sequence 7 3 PRJNA800053 24367 235 6.759259 15.88425865 parvo-like hybrid virus 3367306 Viruses Viruses 418.0 1.8e-112 parvo-like hybrid virus Non-phage NTclustered PRJNA800053_P_NODE_24367_length_235_cov_6.759259_g24203_i0   Parvo-like hybrid virus isolate SpinColumn11, partial genome gi|2814138527|gb|PQ313126.1| 3367306 g24203 i0 99.563 1.94893617 229 1 97.0 0 4 232 1136 1364 458 418.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus parvo-like hybrid virus parvo-like hybrid virus gi|2814138527|gb|PQ313126.1| Viruses Viruses Viruses Viruses 418.0 128.0 1.8e-112 3.18e-33
10141 10141 PRJNA800053_CONTIG_25208|Fish-associated_parvo-like_virus|CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 Luscinia sibilans parvo-like hybrid virus Endogenous or not fish-associated PRJNA800053_CONTIG_25208|Fish-associated_parvo-like_virus PRJNA800053_CONTIG_25208 Luscinia sibilans parvo-like hybrid virus 8 5 4 CLUSTER1_Luscinia_sibilans_parvo-like_hybrid_virus|7|3 OP933679_1_MAG_Fish_associated_parvo_like_virus_isolate_fi099par1_genomic_sequence_sequence 7 3 PRJNA800053 25208 206 4.067669 8.37939814 Fish-associated parvo-like virus 3003969 Viruses Viruses 322.0 1.24e-83 Fish-associated parvo-like virus Non-phage NTclustered PRJNA800053_P_NODE_25208_length_206_cov_4.067669_g25044_i0   MAG: Fish-associated parvo-like virus isolate fi099par1 genomic sequence, sequence gi|2416706441|gb|OP933679.1| 3003969 g25044 i0 94.811 1.029126214 212 2 99.0 1 4 206 2938 2727 212 322.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus Fish-associated parvo-like virus Fish-associated parvo-like virus gi|2416706441|gb|OP933679.1| Viruses Viruses Viruses Viruses 322.0 119.0 1.24e-83 1.37e-29

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;