RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA796216" and clusterLCA_curated = "African cichlid piscichuvirus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • African cichlid piscichuvirus · 3 ✖

bioproject 1

  • PRJNA796216 · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8012 8012 PRJNA796216_CONTIG_914|African_cichlid_piscichuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA796216_CONTIG_914|African_cichlid_piscichuvirus PRJNA796216_CONTIG_914 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA796216 914 313 1.716912 5.37393456 African cichlid piscichuvirus 3065075 Viruses Viruses 63.5 4.44e-09 African cichlid piscichuvirus Non-phage NR PRJNA796216_S_NODE_914_length_313_cov_1.716912_g883_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g883 i0 58.2 1.054313099 55 23 52.7 0 148 312 229 283 330 63.5 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   63.5   4.44e-09
8018 8018 PRJNA796216_CONTIG_1494|Hardyhead_chuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA796216_CONTIG_1494|Hardyhead_chuvirus PRJNA796216_CONTIG_1494 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA796216 1494 259 4.784404 12.39160636 Hardyhead chuvirus 2830721 Viruses Viruses 55.8 1.15e-06 Hardyhead chuvirus Non-phage NR PRJNA796216_S_NODE_1494_length_259_cov_4.784404_g1463_i0   YP_010840939.1 L protein [Hardyhead chuvirus] YP_010840939.1 2830721 g1463 i0 47.0 1.575289575 66 34 75.3 1 8 202 14 79 408 55.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus craterocephali Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   Hardyhead chuvirus     Viruses   Viruses   55.8   1.15e-06
8073 8073 PRJNA796216_CONTIG_8295|Hardyhead_chuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA796216_CONTIG_8295|Hardyhead_chuvirus PRJNA796216_CONTIG_8295 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA796216 8295 154 1.522124 2.34407096 Hardyhead chuvirus 2830721 Viruses Viruses 50.8 1.56e-05 Hardyhead chuvirus Non-phage NR PRJNA796216_S_NODE_8295_length_154_cov_1.522124_g8264_i0   YP_010840939.1 L protein [Hardyhead chuvirus] YP_010840939.1 2830721 g8264 i0 54.2 1.792207792 48 22 93.5 0 11 154 141 188 276 50.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus craterocephali Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   Hardyhead chuvirus     Viruses   Viruses   50.8   1.56e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;