metadata: viruses_fish_associated_curated: 6 rows where bioproject = "PRJNA776830"

6 rows where bioproject = "PRJNA776830"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
3066	3066	PRJNA776830_CONTIG_32644\|Wuhan_sharpbelly_picornavirus_1\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA776830_CONTIG_32644\|Wuhan_sharpbelly_picornavirus_1	PRJNA776830_CONTIG_32644	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA776830	32644	270	1.172589	3.1659903	Wuhan sharpbelly picornavirus 1	2116200	Viruses	Viruses	91.7	3.31e-19	Wuhan sharpbelly picornavirus 1	Non-phage	NR	PRJNA776830_P_NODE_32644_length_270_cov_1.172589_g32379_i0	AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1]	AVM87439.1	2116200	g32379	i0	46.3	1.055555556	95	44	97.8	1	266	3	1029	1123	285	91.7	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales			Wuhan sharpbelly picornavirus 1	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Wuhan sharpbelly picornavirus 1	Viruses	Viruses	91.7	3.31e-19
6882	6882	PRJNA776830_CONTIG_18264\|Carp_edema_virus\|CLUSTER7_Carp_edema_virus\|191\|60	Zebrafish jaw poxvirus	Novel	PRJNA776830_CONTIG_18264\|Carp_edema_virus	PRJNA776830_CONTIG_18264	Carp edema virus	4680	143	36	CLUSTER7_Carp_edema_virus\|191\|60	PRJNA318414_P_NODE_4_length_21553_cov_145.486805_g3_i0\|Carp_edema_virus\|NR\|0\|NA	184	57	PRJNA776830	18264	360	1.271777	4.5783972	Carp edema virus	1653087	Viruses	Viruses	48.9	0.000105	Carp edema virus	Non-phage	NR	PRJNA776830_P_NODE_18264_length_360_cov_1.271777_g17999_i0	BCT22656.1 hypothetical protein [Carp edema virus]	BCT22656.1	1653087	g17999	i0	49.0	0.425	51	23	41.7	2	320	171	7	55	153	48.9	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Pokkesviricetes	Chitovirales	Poxviridae		Carp edema virus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus	Carp edema virus	Viruses	Viruses	48.9	0.000105
7267	7267	PRJNA776830_CONTIG_49955\|Carp_edema_virus\|CLUSTER9_Carp_edema_virus\|189\|53	Zebrafish jaw poxvirus	Novel	PRJNA776830_CONTIG_49955\|Carp_edema_virus	PRJNA776830_CONTIG_49955	Carp edema virus	4680	143	36	CLUSTER9_Carp_edema_virus\|189\|53	PRJNA1075480_S_NODE_36_length_9686_cov_68.302923_g23_i0\|Carp_edema_virus\|NR\|9.15e-292\|NA	188	53	PRJNA776830	49955	241	0.916667	2.20916747	Carp edema virus	1653087	Viruses	Viruses	86.7	5.04e-18	Carp edema virus	Non-phage	NR	PRJNA776830_P_NODE_49955_length_241_cov_0.916667_g49690_i0	BCT22694.1 mRNA capping enzyme small subunit [Carp edema virus]	BCT22694.1	1653087	g49690	i0	52.5	0.995850622	80	38	99.6	0	241	2	186	265	240	86.7	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Pokkesviricetes	Chitovirales	Poxviridae		Carp edema virus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus	Carp edema virus	Viruses	Viruses	86.7	5.04e-18
8050	8050	PRJNA776830_CONTIG_4175\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA776830_CONTIG_4175\|African_cichlid_piscichuvirus	PRJNA776830_CONTIG_4175	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA776830	4175	714	4.127925	29.4733845	African cichlid piscichuvirus	3065075	Viruses	Viruses	126.0	5.05e-29	African cichlid piscichuvirus	Non-phage	NR	PRJNA776830_P_NODE_4175_length_714_cov_4.127925_g3935_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g3935	i0	44.1	0.609243697	145	81	60.9	0	2	436	90	234	435	126.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus	African cichlid piscichuvirus	Viruses	Viruses	126.0	5.05e-29
8413	8413	PRJNA776830_CONTIG_44016\|Bopivirus_sp.\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA776830_CONTIG_44016\|Bopivirus_sp.	PRJNA776830_CONTIG_44016	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA776830	44016	245	1.447674	3.5468013	Bopivirus sp.	2804202	Viruses	Viruses	79.0	6.51e-15	Bopivirus sp.	Non-phage	NR	PRJNA776830_P_NODE_44016_length_245_cov_1.447674_g43751_i0	WEY02609.1 3D protein, partial [Bopivirus sp.]	WEY02609.1	2804202	g43751	i0	53.1	3.967346939	81	36	96.7	2	238	2	392	472	972	79.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Bopivirus	Bopivirus sp.	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	Bopivirus sp.	Viruses	Viruses	79.0	6.51e-15
8414	8414	PRJNA776830_CONTIG_44541\|ludopivirus_A1\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA776830_CONTIG_44541\|ludopivirus_A1	PRJNA776830_CONTIG_44541	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA776830	44541	245	0.895349	2.19360505	ludopivirus A1	2079465	Viruses	Viruses	105.0	3.24e-24	ludopivirus A1	Non-phage	NR	PRJNA776830_P_NODE_44541_length_245_cov_0.895349_g44276_i0	QUS52515.1 polyprotein [ludopivirus A1]	QUS52515.1	2079465	g44276	i0	58.8	4.848979592	80	33	98.0	0	4	243	2243	2322	1188	105.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Ludopivirus	Ludopivirus agrewhifrogo	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus	ludopivirus A1	Viruses	Viruses	105.0	3.24e-24

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;