RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where bioproject = "PRJNA690124" and clusterLCA_curated = "Zebrafish jaw picornavirus"

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tax_genus_NTorNR 3

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw picornavirus · 5 ✖

bioproject 1

  • PRJNA690124 · 5 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8366 8366 PRJNA690124_CONTIG_1914|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_1914|ludopivirus_A1 PRJNA690124_CONTIG_1914 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 1914 1078 2.054726 22.14994628 ludopivirus A1 2079465 Viruses Viruses 65.9 1.68e-07 ludopivirus A1 Non-phage NR PRJNA690124_P_NODE_1914_length_1078_cov_2.054726_g1685_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g1685 i0 27.8 1.486085343 216 123 57.3 9 620 3 1826 2018 1602 65.9 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   65.9   1.68e-07
8376 8376 PRJNA690124_CONTIG_4675|Picornaviridae_sp.|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_4675|Picornaviridae_sp. PRJNA690124_CONTIG_4675 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 4675 732 2.883156 21.10470192 Picornaviridae sp. 1530251 Viruses Viruses 168.0 1.65e-43 Picornaviridae sp. Non-phage NR PRJNA690124_P_NODE_4675_length_732_cov_2.883156_g4340_i0   QKE55033.1 MAG: polyprotein [Picornaviridae sp.] QKE55033.1 1530251 g4340 i0 49.4 0.721311475 176 87 71.3 2 2 523 2141 2316 528 168.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Picornaviridae sp. Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Picornaviridae sp.     Viruses   Viruses   168.0   1.65e-43
8388 8388 PRJNA690124_CONTIG_9097|Mink_kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_9097|Mink_kobuvirus PRJNA690124_CONTIG_9097 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 9097 532 1.392157 7.40627524 Mink kobuvirus 3242813 Viruses Viruses 65.5 9.69e-09 Mink kobuvirus Non-phage NR PRJNA690124_P_NODE_9097_length_532_cov_1.392157_g8732_i0   XEQ84337.1 polyprotein, partial [Mink kobuvirus] XEQ84337.1 3242813 g8732 i0 33.1 1.398496241 124 73 64.3 2 31 372 332 455 744 65.5 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Mink kobuvirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Mink kobuvirus     Viruses   Viruses   65.5   9.69e-09
8395 8395 PRJNA690124_CONTIG_17890|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_17890|Coleura_bat_picornavirus PRJNA690124_CONTIG_17890 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 17890 383 1.203226 4.60835558 Coleura bat picornavirus 3141868 Viruses Viruses 126.0 1.07e-30 Coleura bat picornavirus Non-phage NR PRJNA690124_P_NODE_17890_length_383_cov_1.203226_g17524_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g17524 i0 54.3 1.989556136 127 51 97.9 5 9 383 1973 2094 762 126.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   126.0   1.07e-30
8406 8406 PRJNA690124_CONTIG_32349|pemapivirus_B1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA690124_CONTIG_32349|pemapivirus_B1 PRJNA690124_CONTIG_32349 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA690124 32349 291 1.711009 4.97903619 pemapivirus B1 2870355 Viruses Viruses 118.0 2.12e-28 pemapivirus B1 Non-phage NR PRJNA690124_P_NODE_32349_length_291_cov_1.711009_g31983_i0   YP_010796385.1 polyprotein [pemapivirus B1] YP_010796385.1 2870355 g31983 i0 58.9 0.979381443 95 39 97.9 0 290 6 2431 2525 285 118.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Pemapivirus Pemapivirus brohepotu Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   pemapivirus B1     Viruses   Viruses   118.0   2.12e-28

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;