RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

8 rows where bioproject = "PRJNA662254" and clusterLCA_curated = "Zebrafish influenza B-like virus"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish influenza B-like virus · 8 ✖

bioproject 1

  • PRJNA662254 · 8 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9862 9862 PRJNA662254_CONTIG_874|Betainfluenzavirus|CLUSTER1_Betainfluenzavirus|18|9 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_874|Betainfluenzavirus PRJNA662254_CONTIG_874 Betainfluenzavirus 80 13 8 CLUSTER1_Betainfluenzavirus|18|9 PRJEB2368_P_NODE_159_length_1879_cov_149.901737_g111_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 18 9 PRJNA662254 874 1830 32.645987 597.4215621 Betainfluenzavirus 197912 Viruses Viruses 928.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJNA662254_P_NODE_874_length_1830_cov_32.645987_g686_i0   Influenza B virus B/Victoria/2/87 segment 5 nucleoprotein (NP) gene, complete cds gi|4760940|gb|AF100359.1|AF100359 11520 g686 i0 77.607 84.80601093 1563 329 85.0 17 249 1802 193 1743 155195 929.0 0.998923574 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus gi|4760940|gb|AF100359.1|AF100359 Viruses Viruses Viruses Viruses 928.0 860.0 0.0 7.05999999999999e-293
9898 9898 PRJNA662254_CONTIG_541|Betainfluenzavirus|CLUSTER2_Betainfluenzavirus|15|6 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_541|Betainfluenzavirus PRJNA662254_CONTIG_541 Betainfluenzavirus 80 13 8 CLUSTER2_Betainfluenzavirus|15|6 PRJEB2368_P_NODE_81_length_2400_cov_12.127380_g53_i0|Betainfluenzavirus|NTclustered|0|NA 15 6 PRJNA662254 541 2199 4.032926 88.68404274 Betainfluenzavirus 197912 Viruses Viruses 1507.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJNA662254_P_NODE_541_length_2199_cov_4.032926_g419_i0   Influenza B virus (B/Connecticut/01/2019) segment 1 polymerase PB1 (PB1) gene, complete cds gi|1626609665|gb|MK857730.1| 11520 g419 i0 79.074 100.1368804 2203 453 100.0 8 1 2199 2251 53 220201 1507.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus (B/Lee/194 gi|1626609665|gb|MK857730.1| Viruses Viruses Viruses Viruses 1507.0 1380.0 0.0 0.0
9903 9903 PRJNA662254_CONTIG_873|Wuhan_spiny_eel_influenza_virus|CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_873|Wuhan_spiny_eel_influenza_virus PRJNA662254_CONTIG_873 Wuhan spiny eel influenza virus 80 13 8 CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0|Wuhan_spiny_eel_influenza_virus|NR|2.51e-251|NA 15 11 PRJNA662254 873 1831 40.051195 733.3373805 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 713.0 1.09e-251 Wuhan spiny eel influenza virus Non-phage NR PRJNA662254_P_NODE_873_length_1831_cov_40.051195_g685_i0   AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] AVM87624.1 2116483 g685 i0 62.6 0.932277444 569 209 93.1 3 75 1778 3 568 1707 713.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   713.0   1.09e-251
9910 9910 PRJNA662254_CONTIG_2297|Betainfluenzavirus|CLUSTER1_Betainfluenzavirus_influenzae|15|8 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_2297|Betainfluenzavirus PRJNA662254_CONTIG_2297 Betainfluenzavirus influenzae 80 13 8 CLUSTER1_Betainfluenzavirus_influenzae|15|8 PRJNA897077_P_NODE_539_length_1214_cov_128.316389_g477_i0|Betainfluenzavirus|NTclustered|0|NA 15 8 PRJNA662254 2297 1177 43.203804 508.5087731 Betainfluenzavirus 197912 Viruses Viruses 617.0 9.439999999999999e-172 Betainfluenzavirus Non-phage NTclustered PRJNA662254_P_NODE_2297_length_1177_cov_43.203804_g1918_i0   Influenza B virus (B/reassortant/ISMMS M2P4-3 (B/Pennsylvania/5/2007 x B/Texas/06/2011 x B/Michigan/1/1971 x B/Malaysia/2506/2004-MA)) segment 7 matrix protein 1 (M1) and BM2 protein (BM2) genes, complete cds gi|2413738033|gb|OQ034355.1| 11520 g1918 i0 80.024 71.42650807 841 162 71.0 6 4 841 2 839 84069 617.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Influenza B virus (B/Lee/194 gi|2413738033|gb|OQ034355.1| Viruses Viruses Viruses Viruses 617.0 439.0 9.439999999999999e-172 3.24e-152
9953 9953 PRJNA662254_CONTIG_1289|Wuhan_spiny_eel_influenza_virus|CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_1289|Wuhan_spiny_eel_influenza_virus PRJNA662254_CONTIG_1289 Wuhan spiny eel influenza virus 80 13 8 CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 PRJEB2368_P_NODE_284_length_1571_cov_81.546284_g203_i0|Wuhan_spiny_eel_influenza_virus|NR|1.26e-192|NA 14 10 PRJNA662254 1289 1542 29.628999 456.8791646 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 576.0 1.61e-200 Wuhan spiny eel influenza virus Non-phage NR PRJNA662254_P_NODE_1289_length_1542_cov_29.628999_g1023_i0   AVM87625.1 NA [Wuhan spiny eel influenza virus] AVM87625.1 2116483 g1023 i0 64.0 0.918287938 472 165 90.9 3 1482 82 1 472 1416 576.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   576.0   1.61e-200
10007 10007 PRJNA662254_CONTIG_476|Betainfluenzavirus|CLUSTER3_Betainfluenzavirus|12|7 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_476|Betainfluenzavirus PRJNA662254_CONTIG_476 Betainfluenzavirus 80 13 8 CLUSTER3_Betainfluenzavirus|12|7 PRJEB2368_P_NODE_84_length_2374_cov_54.372700_g56_i0|Betainfluenzavirus|NTclustered|0|NA 12 7 PRJNA662254 476 2296 2.701754 62.03227184 Betainfluenzavirus 197912 Viruses Viruses 1411.0 0.0 Betainfluenzavirus Non-phage NTclustered PRJNA662254_P_NODE_476_length_2296_cov_2.701754_g366_i0   Influenza B virus (B/Hong Kong/03/1992) segment 3, complete sequence gi|119516769|gb|CY018794.1| 416684 g366 i0 78.532 94.23344948 2166 451 94.0 14 124 2282 2159 1 216360 1423.0 0.991567112 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus Betainfluenzavirus gi|119516769|gb|CY018794.1| Viruses Viruses Viruses Viruses 1411.0 1311.0 0.0 0.0
10008 10008 PRJNA662254_CONTIG_489|Betainfluenzavirus_influenzae|CLUSTER2_Betainfluenzavirus_influenzae|12|6 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_489|Betainfluenzavirus_influenzae PRJNA662254_CONTIG_489 Betainfluenzavirus influenzae 80 13 8 CLUSTER2_Betainfluenzavirus_influenzae|12|6 PRJEB2368_P_NODE_78_length_2413_cov_23.010943_g52_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 12 6 PRJNA662254 489 2268 3.131663 71.02611684 Betainfluenzavirus influenzae 2955465 Viruses Viruses 1383.0 0.0 Betainfluenzavirus influenzae Non-phage NR PRJNA662254_P_NODE_489_length_2268_cov_3.131663_g378_i0   6T0W_C Chain C, Polymerase PB2 [Influenza B virus] 6T0W_C 11520 g378 i0 90.3 0.992063492 750 73 99.2 0 2251 2 10 759 2250 1383.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus         Viruses   Viruses   1383.0   0.0
10023 10023 PRJNA662254_CONTIG_2674|Betainfluenzavirus_influenzae|CLUSTER3_Betainfluenzavirus_influenzae|12|7 Zebrafish influenza B-like virus Novel PRJNA662254_CONTIG_2674|Betainfluenzavirus_influenzae PRJNA662254_CONTIG_2674 Betainfluenzavirus influenzae 80 13 8 CLUSTER3_Betainfluenzavirus_influenzae|12|7 PRJEB2368_P_NODE_544_length_1151_cov_155.050269_g412_i0|Betainfluenzavirus_influenzae|NTclustered|9.55e-147|NA 12 7 PRJNA662254 2674 1091 31.94499 348.5198409 Betainfluenzavirus influenzae 2955465 Viruses Viruses 499.0 3.2999999999999998e-136 Betainfluenzavirus influenzae Non-phage NTclustered PRJNA662254_P_NODE_2674_length_1091_cov_31.944990_g2260_i0   Influenza B virus (B/Great Lakes/1739/1954) segment 8 nuclear export protein (NEP) and nonstructural protein 1 (NS1) genes, complete cds gi|2413738156|gb|OQ034364.1| 11520 g2260 i0 75.362 97.12007333 1104 236 99.0 32 1 1090 1082 1 105958 499.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus Betainfluenzavirus influenzae Influenza B virus (B/Lee/194 gi|2413738156|gb|OQ034364.1| Viruses Viruses Viruses Viruses 499.0 390.0 3.2999999999999998e-136 1.0600000000000001e-132

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;