metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA658611" and clusterLCA

2 rows where bioproject = "PRJNA658611" and clusterLCA_curated = "Psittaciform aveparvovirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10065	10065	PRJNA658611_CONTIG_2016\|Flumine_parvovirus_18\|CLUSTER2_Psittaciform_aveparvovirus\|11\|8	Psittaciform aveparvovirus	Endogenous or not fish-associated	PRJNA658611_CONTIG_2016\|Flumine_parvovirus_18	PRJNA658611_CONTIG_2016	Psittaciform aveparvovirus	19	12	2	CLUSTER2_Psittaciform_aveparvovirus\|11\|8	PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0\|Psittaciform_aveparvovirus\|NTclustered\|0\|NA	11	8	PRJNA658611	2016	440	1.949868	8.5794192	Flumine parvovirus 18	2940900	Viruses	Viruses	243.0	3.1200000000000004e-79	Flumine parvovirus 18	Non-phage	NR	PRJNA658611_P_NODE_2016_length_440_cov_1.949868_g1973_i0		UQB76439.1 nonstructural protein [Flumine parvovirus 18]	UQB76439.1	2940900	g1973	i0	80.8	0.995454545	146	28	99.5	0	2	439	67	212	438	243.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		Flumine parvovirus 18	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus	Accipiter gentilis parvo-like hybrid virus	Flumine parvovirus 18	gi\|2015373255\|gb\|MW046576.1\|	Viruses	Viruses	Viruses	Viruses	73.1	243.0	3.27e-08	3.1200000000000004e-79
10066	10066	PRJNA658611_CONTIG_5475\|Flumine_parvovirus_11\|CLUSTER2_Psittaciform_aveparvovirus\|11\|8	Psittaciform aveparvovirus	Endogenous or not fish-associated	PRJNA658611_CONTIG_5475\|Flumine_parvovirus_11	PRJNA658611_CONTIG_5475	Psittaciform aveparvovirus	19	12	2	CLUSTER2_Psittaciform_aveparvovirus\|11\|8	PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0\|Psittaciform_aveparvovirus\|NTclustered\|0\|NA	11	8	PRJNA658611	5475	274	1.502347	4.11643078	Flumine parvovirus 11	2940893	Viruses	Viruses	113.0	3.64e-28	Flumine parvovirus 11	Non-phage	NR	PRJNA658611_P_NODE_5475_length_274_cov_1.502347_g5432_i0		UQB76433.1 nonstructural protein [Flumine parvovirus 11]	UQB76433.1	2940893	g5432	i0	62.6	0.996350365	91	32	99.6	1	2	274	18	106	273	113.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		Flumine parvovirus 11	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus		Flumine parvovirus 11			Viruses		Viruses		113.0		3.64e-28

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;