RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA641991" and clusterLCA_curated = "Zebrafish jaw picornavirus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw picornavirus · 3 ✖

bioproject 1

  • PRJNA641991 · 3 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8351 8351 PRJNA641991_CONTIG_170|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA641991_CONTIG_170|Coleura_bat_picornavirus PRJNA641991_CONTIG_170 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA641991 170 1129 4.17963 47.1880227 Coleura bat picornavirus 3141868 Viruses Viruses 268.0 1.82e-76 Coleura bat picornavirus Non-phage NR PRJNA641991_S_NODE_170_length_1129_cov_4.179630_g120_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g120 i0 50.0 5.742249779 270 132 71.2 3 4 807 2117 2385 6483 268.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   268.0   1.82e-76
8363 8363 PRJNA641991_CONTIG_1664|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA641991_CONTIG_1664|Coleura_bat_picornavirus PRJNA641991_CONTIG_1664 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA641991 1664 405 1.741573 7.05337065 Coleura bat picornavirus 3141868 Viruses Viruses 132.0 1.34e-32 Coleura bat picornavirus Non-phage NR PRJNA641991_S_NODE_1664_length_405_cov_1.741573_g1545_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g1545 i0 54.5 2.985185185 134 54 97.8 5 5 400 1966 2094 1209 132.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   132.0   1.34e-32
8364 8364 PRJNA641991_CONTIG_1772|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA641991_CONTIG_1772|ludopivirus_A1 PRJNA641991_CONTIG_1772 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA641991 1772 393 2.744186 10.78465098 ludopivirus A1 2079465 Viruses Viruses 73.6 3.62e-12 ludopivirus A1 Non-phage NR PRJNA641991_S_NODE_1772_length_393_cov_2.744186_g1653_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g1653 i0 37.9 0.946564885 124 64 93.1 5 25 390 1912 2024 372 73.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   73.6   3.62e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;