RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

3 rows where bioproject = "PRJNA630877"

✎ View and edit SQL

This data as json, CSV (advanced)

tax_family_NTorNR 2

tax_genus_NTorNR 1

bioproject 1

  • PRJNA630877 · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10411 10411 PRJNA630877_CONTIG_17628|Hardyhead_chuvirus|CLUSTER1_Hardyhead_chuvirus|1|1 Hardyhead chuvirus Endogenous or not fish-associated PRJNA630877_CONTIG_17628|Hardyhead_chuvirus PRJNA630877_CONTIG_17628 Hardyhead chuvirus 1 1 1 CLUSTER1_Hardyhead_chuvirus|1|1 PRJNA630877_S_NODE_17628_length_1592_cov_8.558349_g9626_i0|Hardyhead_chuvirus|NR|2.83e-15|NA 1 1 PRJNA630877 17628 1592 8.558349 136.2489161 Hardyhead chuvirus 2830721 Viruses Viruses 90.9 2.83e-15 Hardyhead chuvirus Non-phage NR PRJNA630877_S_NODE_17628_length_1592_cov_8.558349_g9626_i0   YP_010840940.1 nucleoprotein [Hardyhead chuvirus] YP_010840940.1 2830721 g9626 i0 28.1 0.570979899 303 124 39.4 7 1184 558 136 438 909 90.9 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus craterocephali Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Hardyhead chuvirus   Hardyhead chuvirus     Viruses   Viruses   90.9   2.83e-15
10481 10481 PRJNA630877_CONTIG_83407|Blueface_angelfish_adomavirus|CLUSTER1_Blueface_angelfish_adomavirus|1|1 Blueface angelfish adomavirus Insufficient Evidence PRJNA630877_CONTIG_83407|Blueface_angelfish_adomavirus PRJNA630877_CONTIG_83407 Blueface angelfish adomavirus 1 1 1 CLUSTER1_Blueface_angelfish_adomavirus|1|1 PRJNA630877_S_NODE_83407_length_279_cov_3.710084_g64270_i0|Blueface_angelfish_adomavirus|NR|0.00227|NA 1 1 PRJNA630877 83407 279 3.710084 10.35113436 Blueface angelfish adomavirus 2609871 Viruses Viruses 46.6 0.00227 Blueface angelfish adomavirus Non-phage NR PRJNA630877_S_NODE_83407_length_279_cov_3.710084_g64270_i0   DAC81128.1 TPA_asm: LO6 [Blueface angelfish adomavirus] DAC81128.1 2609871 g64270 i0 36.0 0.537634409 50 32 53.8 0 232 83 248 297 150 46.6 1.0 Viruses Adomaviruses             Blueface angelfish adomavirus Viruses;Adomaviruses;Blueface angelfish adomavirus   Blueface angelfish adomavirus     Viruses   Viruses   46.6   0.00227
10483 10483 PRJNA630877_CONTIG_125887|Larimichthys_croaker_adintovirus|CLUSTER6_Larimichthys_croaker_adintovirus|1|1 Larimichthys croaker adintovirus Insufficient Evidence PRJNA630877_CONTIG_125887|Larimichthys_croaker_adintovirus PRJNA630877_CONTIG_125887 Larimichthys croaker adintovirus 19 14 10 CLUSTER6_Larimichthys_croaker_adintovirus|1|1 PRJNA630877_S_NODE_125887_length_182_cov_2.099291_g106750_i0|Larimichthys_croaker_adintovirus|NR|7.84e-21|NA 1 1 PRJNA630877 125887 182 2.099291 3.82070962 Larimichthys croaker adintovirus 2609857 Viruses Viruses 93.6 7.840000000000001e-21 Larimichthys croaker adintovirus Non-phage NR PRJNA630877_S_NODE_125887_length_182_cov_2.099291_g106750_i0   DAC81309.1 TPA_asm: integrase [Larimichthys croaker adintovirus] DAC81309.1 2609857 g106750 i0 74.6 1.945054945 59 15 97.3 0 5 181 160 218 354 93.6 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Larimichthys croaker adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus   Larimichthys croaker adintovirus     Viruses   Viruses   93.6   7.840000000000001e-21

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;