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viruses_fish_associated_curated

7 rows where bioproject = "PRJNA630162" and clusterLCA_curated = "Zebrafish jaw poxvirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw poxvirus · 7 ✖

bioproject 1

  • PRJNA630162 · 7 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4956 4956 PRJNA630162_CONTIG_66518|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_66518|Carp_edema_virus PRJNA630162_CONTIG_66518 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA630162 66518 217 1.297619 2.81583323 Carp edema virus 1653087 Viruses Viruses 87.4 4.95e-18 Carp edema virus Non-phage NR PRJNA630162_P_NODE_66518_length_217_cov_1.297619_g64995_i0   BCT22635.1 NTPase [Carp edema virus] BCT22635.1 1653087 g64995 i0 57.1 0.967741935 70 30 96.8 0 1 210 311 380 210 87.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   87.4   4.95e-18
6212 6212 PRJNA630162_CONTIG_135069|Carp_edema_virus|CLUSTER4_Carp_edema_virus|348|78 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_135069|Carp_edema_virus PRJNA630162_CONTIG_135069 Carp edema virus 4680 143 36 CLUSTER4_Carp_edema_virus|348|78 PRJNA1075480_S_NODE_1_length_24682_cov_102.472876_g0_i0|Carp_edema_virus|NR|2.31e-98|NA 331 77 PRJNA630162 135069 168 1.310924 2.20235232 Carp edema virus 1653087 Viruses Viruses 49.3 6.72e-05 Carp edema virus Non-phage NR PRJNA630162_P_NODE_135069_length_168_cov_1.310924_g133546_i0   BCT22587.1 hypothetical protein [Carp edema virus] BCT22587.1 1653087 g133546 i0 41.1 1.0 56 32 98.2 1 4 168 336 391 168 49.3 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   49.3   6.72e-05
6687 6687 PRJNA630162_CONTIG_21714|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_21714|Carp_edema_virus PRJNA630162_CONTIG_21714 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA630162 21714 395 2.436416 9.6238432 Carp edema virus 1653087 Viruses Viruses 65.9 1.28e-09 Carp edema virus Non-phage NR PRJNA630162_P_NODE_21714_length_395_cov_2.436416_g20196_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g20196 i0 37.2 0.653164557 86 51 63.0 2 122 370 67 152 258 65.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   65.9   1.28e-09
8761 8761 PRJNA630162_CONTIG_82749|Carp_edema_virus|CLUSTER17_Carp_edema_virus|89|39 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_82749|Carp_edema_virus PRJNA630162_CONTIG_82749 Carp edema virus 4680 143 36 CLUSTER17_Carp_edema_virus|89|39 PRJNA854078_P_NODE_51_length_3466_cov_13.696729_g37_i0|Carp_edema_virus|NR|4.02e-76|NA 89 39 PRJNA630162 82749 198 3.067114 6.07288572 Carp edema virus 1653087 Viruses Viruses 78.6 4.75e-15 Carp edema virus Non-phage NR PRJNA630162_P_NODE_82749_length_198_cov_3.067114_g81226_i0   BCT22764.1 kelch-like protein [Carp edema virus] BCT22764.1 1653087 g81226 i0 57.8 0.96969697 64 27 97.0 0 6 197 65 128 192 78.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   78.6   4.75e-15
9308 9308 PRJNA630162_CONTIG_73090|Carp_edema_virus|CLUSTER23_Carp_edema_virus|62|54 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_73090|Carp_edema_virus PRJNA630162_CONTIG_73090 Carp edema virus 4680 143 36 CLUSTER23_Carp_edema_virus|62|54 PRJNA318414_P_NODE_26_length_7203_cov_323.641065_g21_i0|Carp_edema_virus|NR|1.66e-43|NA 57 54 PRJNA630162 73090 210 2.31677 4.865217 Carp edema virus 1653087 Viruses Viruses 43.5 0.0128 Carp edema virus Non-phage NR PRJNA630162_P_NODE_73090_length_210_cov_2.316770_g71567_i0   BCT22575.1 thymidine kinase [Carp edema virus] BCT22575.1 1653087 g71567 i0 31.8 0.942857143 66 43 94.3 1 204 7 223 286 198 43.5 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   43.5   0.0128
9311 9311 PRJNA630162_CONTIG_139847|Carp_edema_virus|CLUSTER23_Carp_edema_virus|62|54 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_139847|Carp_edema_virus PRJNA630162_CONTIG_139847 Carp edema virus 4680 143 36 CLUSTER23_Carp_edema_virus|62|54 PRJNA318414_P_NODE_26_length_7203_cov_323.641065_g21_i0|Carp_edema_virus|NR|1.66e-43|NA 57 54 PRJNA630162 139847 167 0.881356 1.47186452 Carp edema virus 1653087 Viruses Viruses 54.7 7.37e-07 Carp edema virus Non-phage NR PRJNA630162_P_NODE_139847_length_167_cov_0.881356_g138324_i0   BCT22575.1 thymidine kinase [Carp edema virus] BCT22575.1 1653087 g138324 i0 53.1 0.880239521 49 23 88.0 0 153 7 114 162 147 54.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   54.7   7.37e-07
9652 9652 PRJNA630162_CONTIG_83848|Carp_edema_virus|CLUSTER28_Carp_edema_virus|40|36 Zebrafish jaw poxvirus Novel PRJNA630162_CONTIG_83848|Carp_edema_virus PRJNA630162_CONTIG_83848 Carp edema virus 4680 143 36 CLUSTER28_Carp_edema_virus|40|36 PRJNA318414_P_NODE_14_length_10700_cov_125.867398_g11_i0|Carp_edema_virus|NR|1.58e-60|NA 39 35 PRJNA630162 83848 197 2.608108 5.13797276 Carp edema virus 1653087 Viruses Viruses 47.0 0.00065 Carp edema virus Non-phage NR PRJNA630162_P_NODE_83848_length_197_cov_2.608108_g82325_i0   BCT22826.1 hypothetical protein [Carp edema virus] BCT22826.1 1653087 g82325 i0 40.0 0.913705584 60 32 89.8 2 178 2 80 136 180 47.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   47.0   0.00065

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;