metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJNA611476" and tax_family

4 rows where bioproject = "PRJNA611476" and tax_family_NTorNR = "Picornaviridae"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
2107	2107	PRJNA611476_CONTIG_192\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA611476_CONTIG_192\|Zebrafish_picornavirus_2	PRJNA611476_CONTIG_192	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA611476	192	7213	49.534594	3572.930265	Zebrafish picornavirus 2	3063761	Viruses	Viruses	2505.0	0.0	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA611476_P_NODE_192_length_7213_cov_49.534594_g95_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g95	i0	92.036	0.651046721	1783	137	65.0	5	5426	7206	5329	7108	4696	2505.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	2505.0	2480.0	0.0	0.0
4166	4166	PRJNA611476_CONTIG_25240\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA611476_CONTIG_25240\|Cyprivirus_A	PRJNA611476_CONTIG_25240	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA611476	25240	403	1.042424	4.20096872	Cyprivirus A	2304617	Viruses	Viruses	651.0	0.0	Cyprivirus A	Non-phage	NTclustered	PRJNA611476_P_NODE_25240_length_403_cov_1.042424_g24449_i0	Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome	gi\|2500378199\|ref\|NC_076245.1\|	2563826	g24449	i0	95.782	3.004962779	403	17	100.0	0	1	403	5602	5200	1211	651.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|2500378199\|ref\|NC_076245.1\|	Viruses	Viruses	Viruses	Viruses	651.0	247.0	0.0	7.28e-73
8416	8416	PRJNA611476_CONTIG_47573\|Rhimavirus_A\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA611476_CONTIG_47573\|Rhimavirus_A	PRJNA611476_CONTIG_47573	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA611476	47573	314	2.182573	6.85327922	Rhimavirus A	2218594	Viruses	Viruses	63.9	3.25e-09	Rhimavirus A	Non-phage	NR	PRJNA611476_P_NODE_47573_length_314_cov_2.182573_g46782_i0	YP_009552756.1 polyprotein [Rhimavirus A]	YP_009552756.1	2218594	g46782	i0	40.7	3.143312102	108	59	99.4	3	1	312	1713	1819	987	63.9	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Rhimavirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Rhimavirus A			Viruses		Viruses		63.9		3.25e-09
8417	8417	PRJNA611476_CONTIG_54401\|Kobuvirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA611476_CONTIG_54401\|Kobuvirus	PRJNA611476_CONTIG_54401	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA611476	54401	296	2.475336	7.32699456	Kobuvirus	194960	Viruses	Viruses	46.2	0.0044	Kobuvirus	Non-phage	NR	PRJNA611476_P_NODE_54401_length_296_cov_2.475336_g53610_i0	UCS96340.1 MAG: polyprotein, partial [Picornaviridae sp.]	UCS96340.1	1530251	g53610	i0	40.8	3.314189189	71	40	69.9	1	13	219	1208	1278	981	46.6	0.991416309	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Picornaviridae sp.	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Kobuvirus			Viruses		Viruses		46.2		0.0044

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;