metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA558770" and clusterLCA

2 rows where bioproject = "PRJNA558770" and clusterLCA_curated = "Psittacidae aveparvovirus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9937	9937	PRJNA558770_CONTIG_41702\|Psittacidae_aveparvovirus\|CLUSTER1_Psittacidae_aveparvovirus\|15\|6	Psittacidae aveparvovirus	Endogenous or not fish-associated	PRJNA558770_CONTIG_41702\|Psittacidae_aveparvovirus	PRJNA558770_CONTIG_41702	Psittacidae aveparvovirus	18	10	4	CLUSTER1_Psittacidae_aveparvovirus\|15\|6	MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence	15	6	PRJNA558770	41702	329	8.064626	26.53261954	Psittacidae aveparvovirus	2794556	Viruses	Viruses	440.0	5.66e-119	Psittacidae aveparvovirus	Non-phage	NTclustered	PRJNA558770_P_NODE_41702_length_329_cov_8.064626_g39704_i0		MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence	gi\|2015372674\|gb\|MW046380.1\|	2794556	g39704	i0	91.562	0.972644377	320	25	97.0	2	1	319	347	29	320	440.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae	Aveparvovirus	Psittacidae aveparvovirus	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus	Psittacidae aveparvovirus		gi\|2015372674\|gb\|MW046380.1\|	Viruses		Viruses		440.0		5.66e-119
9943	9943	PRJNA558770_CONTIG_192780\|parvo-like_hybrid_virus\|CLUSTER1_Psittacidae_aveparvovirus\|15\|6	Psittacidae aveparvovirus	Endogenous or not fish-associated	PRJNA558770_CONTIG_192780\|parvo-like_hybrid_virus	PRJNA558770_CONTIG_192780	Psittacidae aveparvovirus	18	10	4	CLUSTER1_Psittacidae_aveparvovirus\|15\|6	MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence	15	6	PRJNA558770	192780	234	4.070352	9.52462368	parvo-like hybrid virus	3367306	Viruses	Viruses	134.0	7.28e-27	parvo-like hybrid virus	Non-phage	NTclustered	PRJNA558770_P_NODE_192780_length_234_cov_4.070352_g190775_i0		Parvo-like hybrid virus isolate SpinColumn12, partial genome	gi\|2814138529\|gb\|PQ313127.1\|	3367306	g190775	i0	98.649	0.786324786	74	1	64.0	0	1	74	443	370	184	134.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		parvo-like hybrid virus	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus	parvo-like hybrid virus		gi\|2814138529\|gb\|PQ313127.1\|	Viruses		Viruses		134.0		7.28e-27

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;