metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA558770" and clusterLCA_curated = "Luscinia sibilans parvo-like hybrid virus"

2 rows where bioproject = "PRJNA558770" and clusterLCA_curated = "Luscinia sibilans parvo-like hybrid virus"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10463	10463	PRJNA558770_CONTIG_45822\|Luscinia_sibilans_parvo-like_hybrid_virus\|CLUSTER3_Luscinia_sibilans_parvo-like_hybrid_virus\|1\|1	Luscinia sibilans parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA558770_CONTIG_45822\|Luscinia_sibilans_parvo-like_hybrid_virus	PRJNA558770_CONTIG_45822	Luscinia sibilans parvo-like hybrid virus	8	5	4	CLUSTER3_Luscinia_sibilans_parvo-like_hybrid_virus\|1\|1	PRJNA558770_P_NODE_45822_length_317_cov_68.482270_g43823_i0\|Luscinia_sibilans_parvo-like_hybrid_virus\|NTclustered\|1.05e-11\|NA	1	1	PRJNA558770	45822	317	68.48227	217.0887959	Luscinia sibilans parvo-like hybrid virus	2794515	Viruses	Viruses	84.2	1.05e-11	Luscinia sibilans parvo-like hybrid virus	Non-phage	NTclustered	PRJNA558770_P_NODE_45822_length_317_cov_68.482270_g43823_i0		MAG: Luscinia sibilans parvo-like hybrid virus isolate rtr167par08 genomic sequence, sequence	gi\|2015373198\|gb\|MW046538.1\|	2794515	g43823	i0	90.476	0.19873817	63	6	20.0	0	55	117	523	585	63	84.2	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		Luscinia sibilans parvo-like hybrid virus	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus	Luscinia sibilans parvo-like hybrid virus		gi\|2015373198\|gb\|MW046538.1\|	Viruses		Viruses		84.2		1.05e-11
10492	10492	PRJNA558770_CONTIG_391010\|Luscinia_sibilans_parvo-like_hybrid_virus\|CLUSTER4_Luscinia_sibilans_parvo-like_hybrid_virus\|1\|1	Luscinia sibilans parvo-like hybrid virus	Endogenous or not fish-associated	PRJNA558770_CONTIG_391010\|Luscinia_sibilans_parvo-like_hybrid_virus	PRJNA558770_CONTIG_391010	Luscinia sibilans parvo-like hybrid virus	8	5	4	CLUSTER4_Luscinia_sibilans_parvo-like_hybrid_virus\|1\|1	PRJNA558770_P_NODE_391010_length_173_cov_3.318841_g389005_i0\|Luscinia_sibilans_parvo-like_hybrid_virus\|NR\|1.33e-27\|NA	1	1	PRJNA558770	391010	173	3.318841	5.74159493	Luscinia sibilans parvo-like hybrid virus	2794515	Viruses	Viruses	113.0	1.3300000000000001e-27	Luscinia sibilans parvo-like hybrid virus	Non-phage	NR	PRJNA558770_P_NODE_391010_length_173_cov_3.318841_g389005_i0		QTE03983.1 MAG: capsid protein, partial [Luscinia sibilans parvo-like hybrid virus]	QTE03983.1	2794515	g389005	i0	91.2	0.988439306	57	5	98.8	0	3	173	388	444	171	113.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae		Luscinia sibilans parvo-like hybrid virus	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Luscinia sibilans parvo-like hybrid virus		Luscinia sibilans parvo-like hybrid virus			Viruses		Viruses		113.0		1.3300000000000001e-27

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;