metadata: viruses_fish_associated_curated: 11 rows where bioproject = "PRJNA545942"

11 rows where bioproject = "PRJNA545942"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
1940	1940	PRJNA545942_CONTIG_9\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA545942_CONTIG_9\|Zebrafish_picornavirus_2	PRJNA545942_CONTIG_9	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA545942	9	4479	5.845211	261.8070007	Zebrafish picornavirus 2	3063761	Viruses	Viruses	2976.0	0.0	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA545942_P_NODE_9_length_4479_cov_5.845211_g8_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g8	i0	96.801	0.673141326	1782	54	67.0	3	2694	4474	5329	7108	3015	2976.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	2976.0	1846.0	0.0	0.0
2709	2709	PRJNA545942_CONTIG_5190\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA545942_CONTIG_5190\|Zebrafish_picornavirus_2	PRJNA545942_CONTIG_5190	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA545942	5190	655	2.02921	13.2913255	Zebrafish picornavirus 2	3063761	Viruses	Viruses	372.0	4.4e-98	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA545942_P_NODE_5190_length_655_cov_2.029210_g4897_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g4897	i0	98.571	0.584732824	210	3	58.0	0	446	655	2100	2309	383	372.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Wuhan sharpbelly picornavirus 1	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	372.0	239.0	4.4e-98	1.3099999999999999e-68
2856	2856	PRJNA545942_CONTIG_9147\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA545942_CONTIG_9147\|Zebrafish_picornavirus_2	PRJNA545942_CONTIG_9147	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA545942	9147	483	1.112195	5.37190185	Zebrafish picornavirus 2	3063761	Viruses	Viruses	726.0	0.0	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA545942_P_NODE_9147_length_483_cov_1.112195_g8841_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g8841	i0	98.309	0.857142857	414	7	86.0	0	70	483	2	415	414	726.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2		gi\|2551699335\|gb\|OK619588.1\|	Viruses		Viruses		726.0		0.0
3013	3013	PRJNA545942_CONTIG_21357\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA545942_CONTIG_21357\|Zebrafish_picornavirus_2	PRJNA545942_CONTIG_21357	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA545942	21357	305	1.327586	4.0491373	Zebrafish picornavirus 2	3063761	Viruses	Viruses	329.0	1.17e-85	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA545942_P_NODE_21357_length_305_cov_1.327586_g21051_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g21051	i0	96.04	0.662295082	202	8	66.0	0	104	305	1708	1507	202	329.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	329.0	139.0	1.17e-85	1.3400000000000002e-35
3036	3036	PRJNA545942_CONTIG_24015\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA545942_CONTIG_24015\|Zebrafish_picornavirus_2	PRJNA545942_CONTIG_24015	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA545942	24015	287	3.17757	9.1196259	Zebrafish picornavirus 2	3063761	Viruses	Viruses	503.0	6.1e-138	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA545942_P_NODE_24015_length_287_cov_3.177570_g23709_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g23709	i0	98.258	1.0	287	5	100.0	0	1	287	5759	5473	287	503.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	503.0	188.0	6.1e-138	5.77e-53
8054	8054	PRJNA545942_CONTIG_4947\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA545942_CONTIG_4947\|African_cichlid_piscichuvirus	PRJNA545942_CONTIG_4947	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA545942	4947	670	1.845896	12.3675032	African cichlid piscichuvirus	3065075	Viruses	Viruses	112.0	2.08e-24	African cichlid piscichuvirus	Non-phage	NR	PRJNA545942_P_NODE_4947_length_670_cov_1.845896_g4657_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g4657	i0	47.1	0.541791045	121	62	53.3	1	660	304	114	234	363	112.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus		African cichlid piscichuvirus			Viruses		Viruses		112.0		2.08e-24
10273	10273	PRJNA545942_CONTIG_41239\|Pimephales_minnow_adintovirus\|CLUSTER14_Pimephales_minnow_adintovirus\|2\|2	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJNA545942_CONTIG_41239\|Pimephales_minnow_adintovirus	PRJNA545942_CONTIG_41239	Pimephales minnow adintovirus	168	104	20	CLUSTER14_Pimephales_minnow_adintovirus\|2\|2	PRJNA556992_P_NODE_316701_length_286_cov_2.755869_g314512_i0\|Pimephales_minnow_adintovirus\|NR\|8.34e-15\|NA	2	2	PRJNA545942	41239	241	0.916667	2.20916747	Pimephales minnow adintovirus	2609864	Viruses	Viruses	57.4	2.54e-07	Pimephales minnow adintovirus	Non-phage	NR	PRJNA545942_P_NODE_41239_length_241_cov_0.916667_g40933_i0	DAC81392.1 TPA_asm: PolB-N [Pimephales minnow adintovirus]	DAC81392.1	2609864	g40933	i0	45.8	2.77593361	83	40	97.1	2	235	2	456	538	669	57.4	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus		Pimephales minnow adintovirus			Viruses		Viruses		57.4		2.54e-07
10279	10279	PRJNA545942_CONTIG_1\|Wuhan_japanese_halfbeak_arterivirus\|CLUSTER1_Wuhan_japanese_halfbeak_arterivirus\|1\|1	Zebrafish arterivirus	Novel	PRJNA545942_CONTIG_1\|Wuhan_japanese_halfbeak_arterivirus	PRJNA545942_CONTIG_1	Wuhan japanese halfbeak arterivirus	4	1	4	CLUSTER1_Wuhan_japanese_halfbeak_arterivirus\|1\|1	PRJNA545942_P_NODE_1_length_7419_cov_24.791043_g0_i0\|Wuhan_japanese_halfbeak_arterivirus\|NR\|0\|NA	1	1	PRJNA545942	1	7419	24.791043	1839.24748	Wuhan japanese halfbeak arterivirus	2116443	Viruses	Viruses	1303.0	0.0	Wuhan japanese halfbeak arterivirus	Non-phage	NR	PRJNA545942_P_NODE_1_length_7419_cov_24.791043_g0_i0	YP_009755852.1 1b protein [Wuhan japanese halfbeak arterivirus]	YP_009755852.1	2116443	g0	i0	39.4	0.834613829	2064	1039	76.9	43	1	5706	851	2864	6192	1303.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Nidovirales	Nanhypoviridae	Sajorinivirus	Sajorinivirus hyporhamphi	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Nanhypoviridae;Sajorinivirus;Zebrafish arterivirus		Wuhan japanese halfbeak arterivirus			Viruses		Viruses		1303.0		0.0
10346	10346	PRJNA545942_CONTIG_1483\|Wuhan_japanese_halfbeak_arterivirus\|CLUSTER2_Wuhan_japanese_halfbeak_arterivirus\|1\|1	Zebrafish arterivirus	Novel	PRJNA545942_CONTIG_1483\|Wuhan_japanese_halfbeak_arterivirus	PRJNA545942_CONTIG_1483	Wuhan japanese halfbeak arterivirus	4	1	4	CLUSTER2_Wuhan_japanese_halfbeak_arterivirus\|1\|1	PRJNA545942_P_NODE_1483_length_1164_cov_3.281393_g1323_i0\|Wuhan_japanese_halfbeak_arterivirus\|NR\|5.61e-130\|NA	1	1	PRJNA545942	1483	1164	3.281393	38.19541452	Wuhan japanese halfbeak arterivirus	2116443	Viruses	Viruses	423.0	5.61e-130	Wuhan japanese halfbeak arterivirus	Non-phage	NR	PRJNA545942_P_NODE_1483_length_1164_cov_3.281393_g1323_i0	YP_009755852.1 1b protein [Wuhan japanese halfbeak arterivirus]	YP_009755852.1	2116443	g1323	i0	52.8	1.0	388	178	99.0	3	1156	5	470	856	1164	423.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Nidovirales	Nanhypoviridae	Sajorinivirus	Sajorinivirus hyporhamphi	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Nanhypoviridae;Sajorinivirus;Zebrafish arterivirus	Pseudoterpna coronillaria	Wuhan japanese halfbeak arterivirus	gi\|2918369770\|emb\|OZ237837.1\|	Arthropoda	Viruses	Arthropoda	Viruses	56.5	423.0	0.009	5.61e-130
10396	10396	PRJNA545942_CONTIG_10409\|Wuhan_japanese_halfbeak_arterivirus\|CLUSTER3_Wuhan_japanese_halfbeak_arterivirus\|1\|1	Zebrafish arterivirus	Novel	PRJNA545942_CONTIG_10409\|Wuhan_japanese_halfbeak_arterivirus	PRJNA545942_CONTIG_10409	Wuhan japanese halfbeak arterivirus	4	1	4	CLUSTER3_Wuhan_japanese_halfbeak_arterivirus\|1\|1	PRJNA545942_P_NODE_10409_length_450_cov_1.594164_g10103_i0\|Wuhan_japanese_halfbeak_arterivirus\|NR\|5.18e-17\|NA	1	1	PRJNA545942	10409	450	1.594164	7.173738	Wuhan japanese halfbeak arterivirus	2116443	Viruses	Viruses	88.2	5.18e-17	Wuhan japanese halfbeak arterivirus	Non-phage	NR	PRJNA545942_P_NODE_10409_length_450_cov_1.594164_g10103_i0	YP_009755851.1 1A [Wuhan japanese halfbeak arterivirus]	YP_009755851.1	2116443	g10103	i0	35.8	1.08	162	83	96.0	3	448	17	2037	2195	486	88.2	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Nidovirales	Nanhypoviridae	Sajorinivirus	Sajorinivirus hyporhamphi	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Nanhypoviridae;Sajorinivirus;Zebrafish arterivirus		Wuhan japanese halfbeak arterivirus			Viruses		Viruses		88.2		5.18e-17
10444	10444	PRJNA545942_CONTIG_32648\|Wuhan_japanese_halfbeak_arterivirus\|CLUSTER4_Wuhan_japanese_halfbeak_arterivirus\|1\|1	Zebrafish arterivirus	Novel	PRJNA545942_CONTIG_32648\|Wuhan_japanese_halfbeak_arterivirus	PRJNA545942_CONTIG_32648	Wuhan japanese halfbeak arterivirus	4	1	4	CLUSTER4_Wuhan_japanese_halfbeak_arterivirus\|1\|1	PRJNA545942_P_NODE_32648_length_251_cov_0.865169_g32342_i0\|Wuhan_japanese_halfbeak_arterivirus\|NR\|2.23e-10\|NA	1	1	PRJNA545942	32648	251	0.865169	2.17157419	Wuhan japanese halfbeak arterivirus	2116443	Viruses	Viruses	66.2	2.23e-10	Wuhan japanese halfbeak arterivirus	Non-phage	NR	PRJNA545942_P_NODE_32648_length_251_cov_0.865169_g32342_i0	YP_009755851.1 1A [Wuhan japanese halfbeak arterivirus]	YP_009755851.1	2116443	g32342	i0	39.0	0.920318725	77	47	92.0	0	251	21	1034	1110	231	66.2	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Nidovirales	Nanhypoviridae	Sajorinivirus	Sajorinivirus hyporhamphi	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Nidovirales;Nanhypoviridae;Sajorinivirus;Zebrafish arterivirus		Wuhan japanese halfbeak arterivirus			Viruses		Viruses		66.2		2.23e-10

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;