metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA534016" and tax_species

2 rows where bioproject = "PRJNA534016" and tax_species_NTorNR = "Barramundi calicivirus 1"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9484	9484	PRJNA534016_CONTIG_10\|Barramundi_calicivirus_1\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA534016_CONTIG_10\|Barramundi_calicivirus_1	PRJNA534016_CONTIG_10	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA534016	10	3983	5.904859	235.190534	Barramundi calicivirus 1	3162777	Viruses	Viruses	976.0	0.0	Barramundi calicivirus 1	Non-phage	NR	PRJNA534016_P_NODE_10_length_3983_cov_5.904859_g6_i0		XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1]	XBS25272.1	3162777	g6	i0	45.7	0.866934472	1151	592	85.5	15	8	3412	1070	2203	3453	976.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae		Barramundi calicivirus 1	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus		Barramundi calicivirus 1			Viruses		Viruses		976.0		0.0
9489	9489	PRJNA534016_CONTIG_1062\|Barramundi_calicivirus_1\|CLUSTER1_Barramundi_calicivirus_1\|53\|15	Zebrafish gut calicivirus	Novel	PRJNA534016_CONTIG_1062\|Barramundi_calicivirus_1	PRJNA534016_CONTIG_1062	Barramundi calicivirus 1	48	14	1	CLUSTER1_Barramundi_calicivirus_1\|53\|15	PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0\|Barramundi_calicivirus_1\|NR\|0\|NA	49	15	PRJNA534016	1062	802	2.296296	18.41629392	Barramundi calicivirus 1	3162777	Viruses	Viruses	143.0	1.24e-34	Barramundi calicivirus 1	Non-phage	NR	PRJNA534016_P_NODE_1062_length_802_cov_2.296296_g985_i0		XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1]	XBS25272.1	3162777	g985	i0	31.3	1.122194514	300	158	96.1	10	24	794	739	1033	900	143.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Caliciviridae		Barramundi calicivirus 1	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus		Barramundi calicivirus 1			Viruses		Viruses		143.0		1.24e-34

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;