viruses_fish_associated_curated
3 rows where bioproject = "PRJNA529647"
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| Link | rowid ▼ | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3663 | 3663 | PRJNA529647_CONTIG_3380|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 | Zebrafish picornavirus 1 | Known | PRJNA529647_CONTIG_3380|Cyprivirus_A | PRJNA529647_CONTIG_3380 | Cyprivirus A | 1161 | 220 | 1 | CLUSTER1_Cyprivirus_A|1164|220 | PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA | 1164 | 220 | PRJNA529647 | 3380 | 360 | 1.073171 | 3.8634156 | Cyprivirus A | 2304617 | Viruses | Viruses | 610.0 | 4.4899999999999995e-170 | Cyprivirus A | Non-phage | NTclustered | PRJNA529647_P_NODE_3380_length_360_cov_1.073171_g3319_i0 | Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome | gi|1812398529|gb|MN524064.1| | 2563826 | g3319 | i0 | 97.222 | 3.0 | 360 | 10 | 100.0 | 0 | 1 | 360 | 6219 | 5860 | 1080 | 610.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Picornaviridae | Cyprivirus A | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 | Cyprivirus A | Zebrafish picornavirus 1 | gi|1812398529|gb|MN524064.1| | Viruses | Viruses | Viruses | Viruses | 610.0 | 236.0 | 4.4899999999999995e-170 | 3.13e-69 | ||
| 3971 | 3971 | PRJNA529647_CONTIG_11031|Zebrafish_picornavirus_1|CLUSTER1_Cyprivirus_A|1164|220 | Zebrafish picornavirus 1 | Known | PRJNA529647_CONTIG_11031|Zebrafish_picornavirus_1 | PRJNA529647_CONTIG_11031 | Cyprivirus A | 1161 | 220 | 1 | CLUSTER1_Cyprivirus_A|1164|220 | PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA | 1164 | 220 | PRJNA529647 | 11031 | 242 | 0.911243 | 2.20520806 | Zebrafish picornavirus 1 | 2563826 | Viruses | Viruses | 125.0 | 4.02e-31 | Zebrafish picornavirus 1 | Non-phage | NR | PRJNA529647_P_NODE_11031_length_242_cov_0.911243_g10970_i0 | QID57933.1 polyprotein [Zebrafish picornavirus 1] | QID57933.1 | 2563826 | g10970 | i0 | 81.5 | 1.004132231 | 81 | 14 | 99.2 | 1 | 240 | 1 | 793 | 873 | 243 | 125.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Picornaviridae | Cyprivirus A | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 | Zebrafish picornavirus 1 | Viruses | Viruses | 125.0 | 4.02e-31 | ||||||||
| 8337 | 8337 | PRJNA529647_CONTIG_1|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 | Zebrafish jaw picornavirus | Novel | PRJNA529647_CONTIG_1|Kobuvirus | PRJNA529647_CONTIG_1 | Coleura bat picornavirus | 89 | 37 | 1 | CLUSTER1_Coleura_bat_picornavirus|100|37 | PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA | 93 | 37 | PRJNA529647 | 1 | 8673 | 77.825581 | 6749.81264 | Kobuvirus | 194960 | Viruses | Viruses | 552.0 | 4.86e-155 | Kobuvirus | Non-phage | NR | PRJNA529647_P_NODE_1_length_8673_cov_77.825581_g0_i0 | ADG03747.2 polyprotein [aichivirus B3] | ADG03747.2 | 2919880 | g0 | i0 | 26.8 | 5.629194051 | 2328 | 1248 | 75.3 | 76 | 1764 | 8291 | 439 | 2464 | 48822 | 552.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Picornaviridae | Kobuvirus | Kobuvirus bejaponia | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus | Kobuvirus | Viruses | Viruses | 552.0 | 4.86e-155 |
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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);; CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);; CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);; CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);; CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);; CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);; CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;