RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA523184" and clusterLCA_curated = "Pimephales minnow adintovirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Pimephales minnow adintovirus · 3 ✖

bioproject 1

  • PRJNA523184 · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9863 9863 PRJNA523184_CONTIG_1012|Pimephales_minnow_adintovirus|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA523184_CONTIG_1012|Pimephales_minnow_adintovirus PRJNA523184_CONTIG_1012 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJNA523184 1012 470 4.248276 19.9668972 Pimephales minnow adintovirus 2609864 Viruses Viruses 129.0 7.759999999999999e-34 Pimephales minnow adintovirus Non-phage NR PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g948 i0 56.6 1.436170213 113 49 72.1 0 446 108 118 230 675 129.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus Phlebovirus limboense Pimephales minnow adintovirus gi|2697399720|ref|NC_086346.1| Viruses Viruses Viruses Viruses 54.7 129.0 0.013 7.759999999999999e-34
9868 9868 PRJNA523184_CONTIG_4595|Pimephales_minnow_adintovirus|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA523184_CONTIG_4595|Pimephales_minnow_adintovirus PRJNA523184_CONTIG_4595 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJNA523184 4595 177 1.71831 3.0414087 Pimephales minnow adintovirus 2609864 Viruses Viruses 63.2 4.31e-10 Pimephales minnow adintovirus Non-phage NR PRJNA523184_P_NODE_4595_length_177_cov_1.718310_g4529_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g4529 i0 60.9 0.779661017 46 18 78.0 0 3 140 181 226 138 63.2 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   63.2   4.31e-10
10359 10359 PRJNA523184_CONTIG_2863|Pimephales_minnow_adintovirus|CLUSTER15_Pimephales_minnow_adintovirus|1|1 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA523184_CONTIG_2863|Pimephales_minnow_adintovirus PRJNA523184_CONTIG_2863 Pimephales minnow adintovirus 168 104 20 CLUSTER15_Pimephales_minnow_adintovirus|1|1 PRJNA523184_P_NODE_2863_length_249_cov_1.836449_g2797_i0|Pimephales_minnow_adintovirus|NR|1.45e-06|NA 1 1 PRJNA523184 2863 249 1.836449 4.57275801 Pimephales minnow adintovirus 2609864 Viruses Viruses 55.1 1.45e-06 Pimephales minnow adintovirus Non-phage NR PRJNA523184_P_NODE_2863_length_249_cov_1.836449_g2797_i0   DAC81400.1 TPA_asm: penton [Pimephales minnow adintovirus] DAC81400.1 2609864 g2797 i0 36.7 0.951807229 79 50 95.2 0 245 9 37 115 237 55.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   55.1   1.45e-06

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;