metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJNA493827"

4 rows where bioproject = "PRJNA493827"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
4297	4297	PRJNA493827_CONTIG_65642\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA493827_CONTIG_65642\|Cyprivirus_A	PRJNA493827_CONTIG_65642	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA493827	65642	431	1.075419	4.63505589	Cyprivirus A	2304617	Viruses	Viruses	758.0	0.0	Cyprivirus A	Non-phage	NTclustered	PRJNA493827_P_NODE_65642_length_431_cov_1.075419_g63445_i0	Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome	gi\|1812398529\|gb\|MN524064.1\|	2563826	g63445	i0	98.376	3.0	431	7	100.0	0	1	431	6467	6037	1293	758.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|1812398529\|gb\|MN524064.1\|	Viruses	Viruses	Viruses	Viruses	758.0	280.0	0.0	2.8099999999999998e-84
4346	4346	PRJNA493827_CONTIG_124268\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA493827_CONTIG_124268\|Cyprivirus_A	PRJNA493827_CONTIG_124268	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA493827	124268	307	0.863248	2.65017136	Cyprivirus A	2304617	Viruses	Viruses	453.0	6.72e-123	Cyprivirus A	Non-phage	NTclustered	PRJNA493827_P_NODE_124268_length_307_cov_0.863248_g122070_i0	TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome	gi\|1990739381\|tpg\|BK011179.1\|	2563826	g122070	i0	93.443	2.983713355	305	20	99.0	0	3	307	2737	2433	916	453.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|1990739381\|tpg\|BK011179.1\|	Viruses	Viruses	Viruses	Viruses	453.0	205.0	6.72e-123	6.42e-59
6729	6729	PRJNA493827_CONTIG_222808\|Carp_edema_virus\|CLUSTER6_Carp_edema_virus\|274\|111	Zebrafish jaw poxvirus	Novel	PRJNA493827_CONTIG_222808\|Carp_edema_virus	PRJNA493827_CONTIG_222808	Carp edema virus	4680	143	36	CLUSTER6_Carp_edema_virus\|274\|111	PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0\|Carp_edema_virus\|NR\|0\|NA	264	107	PRJNA493827	222808	243	0.905882	2.20129326	Carp edema virus	1653087	Viruses	Viruses	50.8	5.04e-05	Carp edema virus	Non-phage	NR	PRJNA493827_P_NODE_222808_length_243_cov_0.905882_g220610_i0	BCT22626.1 putative DNA-binding virion core protein [Carp edema virus]	BCT22626.1	1653087	g220610	i0	32.1	1.037037037	84	47	91.4	1	19	240	229	312	252	50.8	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Pokkesviricetes	Chitovirales	Poxviridae	Carp edema virus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus		Carp edema virus			Viruses		Viruses		50.8		5.04e-05
10488	10488	PRJNA493827_CONTIG_233582\|Adintovirus_anguilla1\|CLUSTER10_Adintovirus_anguilla1\|1\|1	Adintovirus anguilla10665	Endogenous or not fish-associated	PRJNA493827_CONTIG_233582\|Adintovirus_anguilla1	PRJNA493827_CONTIG_233582	Adintovirus anguilla1	34	19	10	CLUSTER10_Adintovirus_anguilla1\|1\|1	PRJNA493827_P_NODE_233582_length_241_cov_0.916667_g231384_i0\|Adintovirus_anguilla1\|NR\|1.64e-11\|NA	1	1	PRJNA493827	233582	241	0.916667	2.20916747	Adintovirus anguilla1	3115889	Viruses	Viruses	67.0	1.64e-11	Adintovirus anguilla1	Non-phage	NR	PRJNA493827_P_NODE_233582_length_241_cov_0.916667_g231384_i0	DBA49783.1 MAG TPA_asm: Adenain [Adintovirus anguilla10665]	DBA49783.1	3115889	g231384	i0	61.9	1.543568465	42	16	52.3	0	236	111	40	81	372	67.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Adintovirus anguilla10665	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Adintovirus anguilla10665		Adintovirus anguilla1			Viruses		Viruses		67.0		1.64e-11

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;