RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA489308"

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tax_genus_NTorNR 2

tax_family_NTorNR 2

bioproject 1

  • PRJNA489308 · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9229 9229 PRJNA489308_CONTIG_38064|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA489308_CONTIG_38064|African_cichlid_piscichuvirus PRJNA489308_CONTIG_38064 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA489308 38064 242 0.911243 2.20520806 African cichlid piscichuvirus 3065075 Viruses Viruses 72.8 9.8e-13 African cichlid piscichuvirus Non-phage NR PRJNA489308_P_NODE_38064_length_242_cov_0.911243_g37988_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g37988 i0 43.0 0.979338843 79 45 97.9 0 238 2 132 210 237 72.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   72.8   9.8e-13
9681 9681 PRJNA489308_CONTIG_30304|Salarius_guttatus_piscichuvirus|CLUSTER2_Chuvivirus|39|39 Chuvivirus Endogenous or not fish-associated PRJNA489308_CONTIG_30304|Salarius_guttatus_piscichuvirus PRJNA489308_CONTIG_30304 Chuvivirus 116 110 4 CLUSTER2_Chuvivirus|39|39 PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0|Chuvivirus|NR|3.94e-45|NA 39 39 PRJNA489308 30304 252 1.290503 3.25206756 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 115.0 7.33e-28 Salarius guttatus piscichuvirus Non-phage NR PRJNA489308_P_NODE_30304_length_252_cov_1.290503_g30228_i0   UVF58769.1 MAG: S protein [Salarius guttatus piscichuvirus] UVF58769.1 2951531 g30228 i0 60.7 3.0 84 33 100.0 0 1 252 337 420 756 115.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Salarius guttatus piscichuvirus     Viruses   Viruses   115.0   7.33e-28
10311 10311 PRJNA489308_CONTIG_214|Psittacidae_aveparvovirus|CLUSTER3_Psittacidae_aveparvovirus|1|1 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA489308_CONTIG_214|Psittacidae_aveparvovirus PRJNA489308_CONTIG_214 Psittacidae aveparvovirus 18 10 4 CLUSTER3_Psittacidae_aveparvovirus|1|1 PRJNA489308_P_NODE_214_length_1473_cov_66.962857_g184_i0|Psittacidae_aveparvovirus|NR|1.74e-86|NA 1 1 PRJNA489308 214 1473 66.962857 986.3628836 Psittacidae aveparvovirus 2794556 Viruses Viruses 285.0 1.74e-86 Psittacidae aveparvovirus Non-phage NR PRJNA489308_P_NODE_214_length_1473_cov_66.962857_g184_i0   QTE03752.1 MAG: hypothetical protein [Psittacidae aveparvovirus] QTE03752.1 2794556 g184 i0 45.3 1.50509165 369 187 73.5 9 1110 28 165 526 2217 285.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus Flumine parvovirus 18 Psittacidae aveparvovirus gi|2235497426|gb|OM954002.1| Viruses Viruses Viruses Viruses 121.0 285.0 4.0900000000000002e-22 1.74e-86

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;