metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA487785" and tax_family

2 rows where bioproject = "PRJNA487785" and tax_family_NTorNR = "Iridoviridae"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
10242	10242	PRJNA487785_CONTIG_2323\|Ranavirus\|CLUSTER4_Ranavirus\|2\|1	Largemouth bass virus	Known	PRJNA487785_CONTIG_2323\|Ranavirus	PRJNA487785_CONTIG_2323	Ranavirus	151	4	43	CLUSTER4_Ranavirus\|2\|1	PRJNA487785_P_NODE_2323_length_548_cov_3.067437_g2049_i0\|Ranavirus\|NTclustered\|1.14e-13\|NA	2	1	PRJNA487785	2323	548	3.067437	16.80955476	Ranavirus	10492	Viruses	Viruses	91.6	1.14e-13	Ranavirus	Non-phage	NTclustered	PRJNA487785_P_NODE_2323_length_548_cov_3.067437_g2049_i0		Short-finned eel ranavirus isolate ANGA14001, complete genome	gi\|1073690607\|ref\|NC_030394.2\|	638660	g2049	i0	94.828	3.138686131	58	3	11.0	0	166	223	113740	113797	1720	91.6	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Megaviricetes	Pimascovirales	Iridoviridae	Ranavirus	Short-finned eel ranavirus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Megaviricetes;Pimascovirales;Iridoviridae;Ranavirus;Largemouth bass virus	Ranavirus		gi\|1073690607\|ref\|NC_030394.2\|	Viruses		Viruses		91.6		1.14e-13
10243	10243	PRJNA487785_CONTIG_2326\|Ranavirus\|CLUSTER4_Ranavirus\|2\|1	Largemouth bass virus	Known	PRJNA487785_CONTIG_2326\|Ranavirus	PRJNA487785_CONTIG_2326	Ranavirus	151	4	43	CLUSTER4_Ranavirus\|2\|1	PRJNA487785_P_NODE_2323_length_548_cov_3.067437_g2049_i0\|Ranavirus\|NTclustered\|1.14e-13\|NA	2	1	PRJNA487785	2326	548	2.813102	15.41579896	Ranavirus	10492	Viruses	Viruses	91.6	1.14e-13	Ranavirus	Non-phage	NTclustered	PRJNA487785_P_NODE_2326_length_548_cov_2.813102_g2049_i1		Short-finned eel ranavirus isolate ANGA14001, complete genome	gi\|1073690607\|ref\|NC_030394.2\|	638660	g2049	i1	94.828	3.138686131	58	3	11.0	0	326	383	113797	113740	1720	91.6	1.0	Viruses	Varidnaviria	Bamfordvirae	Nucleocytoviricota	Megaviricetes	Pimascovirales	Iridoviridae	Ranavirus	Short-finned eel ranavirus	Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Megaviricetes;Pimascovirales;Iridoviridae;Ranavirus;Largemouth bass virus	Ranavirus		gi\|1073690607\|ref\|NC_030394.2\|	Viruses		Viruses		91.6		1.14e-13

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;