RNAquarium Metadata Server
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viruses_fish_associated_curated

1 row where bioproject = "PRJNA482207" and clusterLCA_curated = "Zebrafish influenza-like virus"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish influenza-like virus · 1 ✖

bioproject 1

  • PRJNA482207 · 1 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10264 10264 PRJNA482207_CONTIG_16496|Siamese_algae-eater_influenza-like_virus|CLUSTER3_Siamese_algae-eater_influenza-like_virus|2|1 Zebrafish influenza-like virus Novel PRJNA482207_CONTIG_16496|Siamese_algae-eater_influenza-like_virus PRJNA482207_CONTIG_16496 Siamese algae-eater influenza-like virus 14 4 9 CLUSTER3_Siamese_algae-eater_influenza-like_virus|2|1 MT926384_1_Siamese_algae_eater_influenza_like_virus_strain_SAEILV_fish_T1K_hemagglutinin_HA_gene_complete_cds 2 1 PRJNA482207 16496 272 1.40201 3.8134672 Siamese algae-eater influenza-like virus 2777035 Viruses Viruses 401.0 2.1500000000000002e-107 Siamese algae-eater influenza-like virus Non-phage NTclustered PRJNA482207_P_NODE_16496_length_272_cov_1.402010_g16386_i0   Siamese algae-eater influenza-like virus strain SAEILV/fish-T1K hemagglutinin (HA) gene, complete cds gi|1912436624|gb|MT926384.1| 2777035 g16386 i0 93.358 0.996323529 271 18 99.0 0 1 271 565 835 271 401.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Siamese algae-eater influenza-like virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Zebrafish influenza-like virus Siamese algae-eater influenza-like virus Siamese algae-eater influenza-like virus gi|1912436624|gb|MT926384.1| Viruses Viruses Viruses Viruses 401.0 178.0 2.1500000000000002e-107 4.83e-51

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;