RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA448207" and clusterLCA_curated = "Zebrafish influenza B-like virus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish influenza B-like virus · 3 ✖

bioproject 1

  • PRJNA448207 · 3 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9872 9872 PRJNA448207_CONTIG_7886|Betainfluenzavirus|CLUSTER1_Betainfluenzavirus|18|9 Zebrafish influenza B-like virus Novel PRJNA448207_CONTIG_7886|Betainfluenzavirus PRJNA448207_CONTIG_7886 Betainfluenzavirus 80 13 8 CLUSTER1_Betainfluenzavirus|18|9 PRJEB2368_P_NODE_159_length_1879_cov_149.901737_g111_i0|Betainfluenzavirus_influenzae|NTclustered|0|NA 18 9 PRJNA448207 7886 435 1.121547 4.87872945 Betainfluenzavirus 197912 Viruses Viruses 239.0 1.15e-75 Betainfluenzavirus Non-phage NR PRJNA448207_P_NODE_7886_length_435_cov_1.121547_g7724_i0   AXG64379.1 nucleoprotein, partial [Influenza B virus] AXG64379.1 11520 g7724 i0 84.0 7.944827586 144 23 99.3 0 2 433 91 234 3456 239.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae Betainfluenzavirus Betainfluenzavirus influenzae Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Betainfluenzavirus     Viruses   Viruses   239.0   1.15e-75
9932 9932 PRJNA448207_CONTIG_23001|Wuhan_spiny_eel_influenza_virus|CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 Zebrafish influenza B-like virus Novel PRJNA448207_CONTIG_23001|Wuhan_spiny_eel_influenza_virus PRJNA448207_CONTIG_23001 Wuhan spiny eel influenza virus 80 13 8 CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0|Wuhan_spiny_eel_influenza_virus|NR|2.51e-251|NA 15 11 PRJNA448207 23001 267 1.206186 3.22051662 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 97.1 3.7e-21 Wuhan spiny eel influenza virus Non-phage NR PRJNA448207_P_NODE_23001_length_267_cov_1.206186_g22838_i0   AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] AVM87624.1 2116483 g22838 i0 56.6 0.853932584 76 33 85.4 0 229 2 3 78 228 97.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   97.1   3.7e-21
9935 9935 PRJNA448207_CONTIG_28146|Wuhan_spiny_eel_influenza_virus|CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 Zebrafish influenza B-like virus Novel PRJNA448207_CONTIG_28146|Wuhan_spiny_eel_influenza_virus PRJNA448207_CONTIG_28146 Wuhan spiny eel influenza virus 80 13 8 CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0|Wuhan_spiny_eel_influenza_virus|NR|2.51e-251|NA 15 11 PRJNA448207 28146 248 0.88 2.1824 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 100.0 2.36e-22 Wuhan spiny eel influenza virus Non-phage NR PRJNA448207_P_NODE_28146_length_248_cov_0.880000_g27983_i0   AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] AVM87624.1 2116483 g27983 i0 61.3 0.967741935 80 31 96.8 0 240 1 97 176 240 100.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   100.0   2.36e-22

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;