RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA438111" and clusterLCA_curated = "Salarius guttatus piscichuvirus"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Salarius guttatus piscichuvirus · 3 ✖

bioproject 1

  • PRJNA438111 · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9131 9131 PRJNA438111_CONTIG_2704|Hardyhead_chuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA438111_CONTIG_2704|Hardyhead_chuvirus PRJNA438111_CONTIG_2704 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA438111 2704 591 2.743772 16.21569252 Hardyhead chuvirus 2830721 Viruses Viruses 94.0 2.32e-18 Hardyhead chuvirus Non-phage NR PRJNA438111_P_NODE_2704_length_591_cov_2.743772_g2244_i0   YP_010840939.1 L protein [Hardyhead chuvirus] YP_010840939.1 2830721 g2244 i0 41.4 0.736040609 145 80 71.6 3 6 428 24 167 435 94.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Piscichuvirus craterocephali Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Hardyhead chuvirus     Viruses   Viruses   94.0   2.32e-18
9152 9152 PRJNA438111_CONTIG_5127|African_cichlid_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA438111_CONTIG_5127|African_cichlid_piscichuvirus PRJNA438111_CONTIG_5127 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA438111 5127 436 2.486486 10.84107896 African cichlid piscichuvirus 3065075 Viruses Viruses 99.4 5.65e-21 African cichlid piscichuvirus Non-phage NR PRJNA438111_P_NODE_5127_length_436_cov_2.486486_g4559_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g4559 i0 42.0 1.651376147 119 69 81.9 0 421 65 97 215 720 99.4 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   99.4   5.65e-21
9181 9181 PRJNA438111_CONTIG_11356|Salarius_guttatus_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA438111_CONTIG_11356|Salarius_guttatus_piscichuvirus PRJNA438111_CONTIG_11356 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA438111 11356 305 3.608696 11.0065228 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 65.1 1.14e-09 Salarius guttatus piscichuvirus Non-phage NR PRJNA438111_P_NODE_11356_length_305_cov_3.608696_g10731_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g10731 i0 43.6 2.31147541 78 43 75.7 1 231 1 1 78 705 65.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   65.1   1.14e-09

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;