metadata: viruses_fish_associated_curated: 5 rows where bioproject = "PRJNA421571"

5 rows where bioproject = "PRJNA421571"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
4301	4301	PRJNA421571_CONTIG_66048\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA421571_CONTIG_66048\|Cyprivirus_A	PRJNA421571_CONTIG_66048	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA421571	66048	317	1.262295	4.00147515	Cyprivirus A	2304617	Viruses	Viruses	536.0	6.73e-148	Cyprivirus A	Non-phage	NTclustered	PRJNA421571_P_NODE_66048_length_317_cov_1.262295_g63499_i0	TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome	gi\|1990739381\|tpg\|BK011179.1\|	2563826	g63499	i0	97.452	2.971608833	314	8	99.0	0	4	317	6155	5842	942	536.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|1990739381\|tpg\|BK011179.1\|	Viruses	Viruses	Viruses	Viruses	536.0	206.0	6.73e-148	4.09e-59
8398	8398	PRJNA421571_CONTIG_24327\|Rhimavirus_A\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA421571_CONTIG_24327\|Rhimavirus_A	PRJNA421571_CONTIG_24327	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA421571	24327	695	1.567524	10.8942918	Rhimavirus A	2218594	Viruses	Viruses	82.0	8.04e-14	Rhimavirus A	Non-phage	NR	PRJNA421571_P_NODE_24327_length_695_cov_1.567524_g21880_i0	YP_009552756.1 polyprotein [Rhimavirus A]	YP_009552756.1	2218594	g21880	i0	39.6	3.479136691	139	79	58.3	3	289	693	1703	1840	2418	82.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Rhimavirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Rhimavirus A			Viruses		Viruses		82.0		8.04e-14
8402	8402	PRJNA421571_CONTIG_28308\|Coleura_bat_picornavirus\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA421571_CONTIG_28308\|Coleura_bat_picornavirus	PRJNA421571_CONTIG_28308	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA421571	28308	617	1.827206	11.27386102	Coleura bat picornavirus	3141868	Viruses	Viruses	233.0	8.61e-67	Coleura bat picornavirus	Non-phage	NR	PRJNA421571_P_NODE_28308_length_617_cov_1.827206_g25801_i0	XBH24011.1 MAG: polyprotein [Coleura bat picornavirus]	XBH24011.1	3141868	g25801	i0	54.9	4.959481361	204	91	99.2	1	614	3	2097	2299	3060	233.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales		Coleura bat picornavirus	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Coleura bat picornavirus			Viruses		Viruses		233.0		8.61e-67
8410	8410	PRJNA421571_CONTIG_37060\|Picornaviridae\|CLUSTER1_Coleura_bat_picornavirus\|100\|37	Zebrafish jaw picornavirus	Novel	PRJNA421571_CONTIG_37060\|Picornaviridae	PRJNA421571_CONTIG_37060	Coleura bat picornavirus	89	37	1	CLUSTER1_Coleura_bat_picornavirus\|100\|37	PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0\|Kobuvirus\|NR\|2.54e-153\|NA	93	37	PRJNA421571	37060	496	2.803783	13.90676368	Picornaviridae	12058	Viruses	Viruses	74.3	4.61e-12	Picornaviridae	Non-phage	NR	PRJNA421571_P_NODE_37060_length_496_cov_2.803783_g34517_i0	NP_740444.1 3D [aichivirus A1]	NP_740444.1	1313215	g34517	i0	42.7	5.195564516	96	53	56.9	2	3	284	369	464	2577	74.3	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Kobuvirus aichi	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus		Picornaviridae			Viruses		Viruses		74.3		4.61e-12
10067	10067	PRJNA421571_CONTIG_6795\|Parvoviridae_sp.\|CLUSTER2_Psittaciform_aveparvovirus\|11\|8	Psittaciform aveparvovirus	Endogenous or not fish-associated	PRJNA421571_CONTIG_6795\|Parvoviridae_sp.	PRJNA421571_CONTIG_6795	Psittaciform aveparvovirus	19	12	2	CLUSTER2_Psittaciform_aveparvovirus\|11\|8	PRJNA642647_P_NODE_4_length_3343_cov_14.130067_g3_i0\|Psittaciform_aveparvovirus\|NTclustered\|0\|NA	11	8	PRJNA421571	6795	1441	118.482456	1707.332191	Parvoviridae sp.	1940570	Viruses	Viruses	468.0	9.5e-160	Parvoviridae sp.	Non-phage	NR	PRJNA421571_P_NODE_6795_length_1441_cov_118.482456_g2930_i1	XNT21000.1 MAG: replication protein [Parvoviridae sp.]	XNT21000.1	1940570	g2930	i1	71.0	1.290770298	310	88	64.5	1	474	1403	80	387	1860	468.0	1.0	Viruses	Monodnaviria	Shotokuvirae	Cossaviricota	Quintoviricetes	Piccovirales	Parvoviridae	Parvoviridae sp.	Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Psittaciform aveparvovirus	Flumine parvovirus 11	Parvoviridae sp.	gi\|2235497401\|gb\|OM953996.1\|	Viruses	Viruses	Viruses	Viruses	99.0	468.0	1.87e-15	9.5e-160

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;