RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where bioproject = "PRJNA407368", clusterLCA_curated = "Psittacidae aveparvovirus" and tax_family_NTorNR = "Parvoviridae"

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tax_species_NTorNR 1

tax_genus_NTorNR 1

tax_family_NTorNR 1

  • Parvoviridae · 2 ✖

clusterLCA_curated 1

  • Psittacidae aveparvovirus · 2 ✖

bioproject 1

  • PRJNA407368 · 2 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9913 9913 PRJNA407368_CONTIG_4786|Psittacidae_aveparvovirus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA407368_CONTIG_4786|Psittacidae_aveparvovirus PRJNA407368_CONTIG_4786 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA407368 4786 257 3.061404 7.86780828 Psittacidae aveparvovirus 2794556 Viruses Viruses 263.0 9.92e-66 Psittacidae aveparvovirus Non-phage NTclustered PRJNA407368_S_NODE_4786_length_257_cov_3.061404_g4684_i0   MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence gi|2015372674|gb|MW046380.1| 2794556 g4684 i0 94.675 0.929961089 169 9 92.0 0 21 189 681 513 239 263.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus Psittacidae aveparvovirus Psittacidae aveparvovirus gi|2015372674|gb|MW046380.1| Viruses Viruses Viruses Viruses 263.0 104.0 9.92e-66 9.870000000000001e-26
9919 9919 PRJNA407368_CONTIG_7698|Psittacidae_aveparvovirus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA407368_CONTIG_7698|Psittacidae_aveparvovirus PRJNA407368_CONTIG_7698 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA407368 7698 186 2.382166 4.43082876 Psittacidae aveparvovirus 2794556 Viruses Viruses 289.0 1.11e-73 Psittacidae aveparvovirus Non-phage NTclustered PRJNA407368_S_NODE_7698_length_186_cov_2.382166_g7596_i0   MAG: Psittacidae aveparvovirus isolate fmg67par043 genomic sequence, sequence gi|2015372674|gb|MW046380.1| 2794556 g7596 i0 94.624 1.0 186 10 100.0 0 1 186 469 284 186 289.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus Psittacidae aveparvovirus Psittacidae aveparvovirus gi|2015372674|gb|MW046380.1| Viruses Viruses Viruses Viruses 289.0 112.0 1.11e-73 2.62e-29

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;