metadata: viruses_fish_associated_curated: 3 rows where bioproject = "PRJNA382357" and tax_family

3 rows where bioproject = "PRJNA382357" and tax_family_NTorNR = "Chuviridae"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
8133	8133	PRJNA382357_CONTIG_39277\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA382357_CONTIG_39277\|African_cichlid_piscichuvirus	PRJNA382357_CONTIG_39277	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA382357	39277	365	5.631579	20.55526335	African cichlid piscichuvirus	3065075	Viruses	Viruses	98.2	5.91e-21	African cichlid piscichuvirus	Non-phage	NR	PRJNA382357_P_NODE_39277_length_365_cov_5.631579_g38538_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g38538	i0	50.5	0.747945205	91	45	74.8	0	14	286	142	232	273	98.2	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus	African cichlid piscichuvirus	Viruses	Viruses	98.2	5.91e-21
9227	9227	PRJNA382357_CONTIG_34200\|Hardyhead_chuvirus\|CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	Salarius guttatus piscichuvirus	Endogenous or not fish-associated	PRJNA382357_CONTIG_34200\|Hardyhead_chuvirus	PRJNA382357_CONTIG_34200	Salarius guttatus piscichuvirus	67	58	5	CLUSTER1_Salarius_guttatus_piscichuvirus\|63\|56	PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0\|Salarius_guttatus_piscichuvirus\|NR\|7.17e-28\|NA	63	56	PRJNA382357	34200	388	3.247706	12.60109928	Hardyhead chuvirus	2830721	Viruses	Viruses	56.6	2.81e-06	Hardyhead chuvirus	Non-phage	NR	PRJNA382357_P_NODE_34200_length_388_cov_3.247706_g33461_i0	YP_010840939.1 L protein [Hardyhead chuvirus]	YP_010840939.1	2830721	g33461	i0	48.5	0.510309278	66	33	50.3	1	11	205	14	79	198	56.6	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Piscichuvirus craterocephali	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus	Hardyhead chuvirus	Viruses	Viruses	56.6	2.81e-06
9693	9693	PRJNA382357_CONTIG_113195\|Chuvivirus\|CLUSTER2_Chuvivirus\|39\|39	Chuvivirus	Endogenous or not fish-associated	PRJNA382357_CONTIG_113195\|Chuvivirus	PRJNA382357_CONTIG_113195	Chuvivirus	116	110	4	CLUSTER2_Chuvivirus\|39\|39	PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0\|Chuvivirus\|NR\|3.94e-45\|NA	39	39	PRJNA382357	113195	229	1.547619	3.54404751	Chuvivirus	2842604	Viruses	Viruses	82.4	3.12e-16	Chuvivirus	Non-phage	NR	PRJNA382357_P_NODE_113195_length_229_cov_1.547619_g112456_i0	WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1]	WET19887.1	3032433	g112456	i0	69.6	1.467248908	56	17	73.4	0	2	169	312	367	336	82.4	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Chuvivirus	Freshwater turtle neural virus 1	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus	Chuvivirus	Viruses	Viruses	82.4	3.12e-16

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;