RNAquarium Metadata Server
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viruses_fish_associated_curated

2 rows where bioproject = "PRJNA345071", clusterLCA_curated = "Zebrafish influenza B-like virus" and tax_species_NTorNR = "Wuhan spiny eel influenza virus"

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tax_species_NTorNR 1

  • Wuhan spiny eel influenza virus · 2 ✖

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish influenza B-like virus · 2 ✖

bioproject 1

  • PRJNA345071 · 2 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9885 9885 PRJNA345071_CONTIG_21|Wuhan_spiny_eel_influenza_virus|CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 Zebrafish influenza B-like virus Novel PRJNA345071_CONTIG_21|Wuhan_spiny_eel_influenza_virus PRJNA345071_CONTIG_21 Wuhan spiny eel influenza virus 80 13 8 CLUSTER1_Wuhan_spiny_eel_influenza_virus|15|11 PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0|Wuhan_spiny_eel_influenza_virus|NR|2.51e-251|NA 15 11 PRJNA345071 21 1869 841.831292 15733.82685 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 713.0 2.5100000000000003e-251 Wuhan spiny eel influenza virus Non-phage NR PRJNA345071_P_NODE_21_length_1869_cov_841.831292_g15_i0   AVM87624.1 hemagglutinin, partial [Wuhan spiny eel influenza virus] AVM87624.1 2116483 g15 i0 62.7 0.913322632 569 208 91.2 3 1796 93 3 568 1707 713.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   713.0   2.5100000000000003e-251
9945 9945 PRJNA345071_CONTIG_41|Wuhan_spiny_eel_influenza_virus|CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 Zebrafish influenza B-like virus Novel PRJNA345071_CONTIG_41|Wuhan_spiny_eel_influenza_virus PRJNA345071_CONTIG_41 Wuhan spiny eel influenza virus 80 13 8 CLUSTER2_Wuhan_spiny_eel_influenza_virus|14|10 PRJEB2368_P_NODE_284_length_1571_cov_81.546284_g203_i0|Wuhan_spiny_eel_influenza_virus|NR|1.26e-192|NA 14 10 PRJNA345071 41 1563 367.995973 5751.777058 Wuhan spiny eel influenza virus 2116483 Viruses Viruses 578.0 1.75e-201 Wuhan spiny eel influenza virus Non-phage NR PRJNA345071_P_NODE_41_length_1563_cov_367.995973_g33_i0   AVM87625.1 NA [Wuhan spiny eel influenza virus] AVM87625.1 2116483 g33 i0 64.4 0.905950096 472 163 89.6 3 66 1466 1 472 1416 578.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Insthoviricetes Articulavirales Orthomyxoviridae   Wuhan spiny eel influenza virus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Insthoviricetes;Articulavirales;Orthomyxoviridae;Betainfluenzavirus;Zebrafish influenza B-like virus   Wuhan spiny eel influenza virus     Viruses   Viruses   578.0   1.75e-201

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;