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viruses_fish_associated_curated

10 rows where bioproject = "PRJNA287283" and clusterLCA_curated = "Zebrafish jaw poxvirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw poxvirus · 10 ✖

bioproject 1

  • PRJNA287283 · 10 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4739 4739 PRJNA287283_CONTIG_8240|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_8240|Carp_edema_virus PRJNA287283_CONTIG_8240 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA287283 8240 185 1.272727 2.35454495 Carp edema virus 1653087 Viruses Viruses 78.2 5.52e-15 Carp edema virus Non-phage NR PRJNA287283_P_NODE_8240_length_185_cov_1.272727_g8016_i0   BCT22635.1 NTPase [Carp edema virus] BCT22635.1 1653087 g8016 i0 58.3 0.972972973 60 25 97.3 0 185 6 723 782 180 78.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   78.2   5.52e-15
4748 4748 PRJNA287283_CONTIG_8863|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_8863|Carp_edema_virus PRJNA287283_CONTIG_8863 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA287283 8863 181 1.3125 2.375625 Carp edema virus 1653087 Viruses Viruses 54.3 1.37e-06 Carp edema virus Non-phage NR PRJNA287283_P_NODE_8863_length_181_cov_1.312500_g8639_i0   BCT22635.1 NTPase [Carp edema virus] BCT22635.1 1653087 g8639 i0 64.7 0.563535912 34 12 56.4 0 103 2 181 214 102 54.3 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   54.3   1.37e-06
5257 5257 PRJNA287283_CONTIG_4273|Carp_edema_virus|CLUSTER2_Carp_edema_virus|553|75 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_4273|Carp_edema_virus PRJNA287283_CONTIG_4273 Carp edema virus 4680 143 36 CLUSTER2_Carp_edema_virus|553|75 LC613089_1_Carp_edema_virus_FTI2020_DNA_complete_genome 552 75 PRJNA287283 4273 303 1.344 4.07232 Carp edema virus 1653087 Viruses Viruses 179.0 9.16e-50 Carp edema virus Non-phage NR PRJNA287283_P_NODE_4273_length_303_cov_1.344000_g4049_i0   BCT22673.1 DNA-dependent RNA polymerase subunit rpo132 [Carp edema virus] BCT22673.1 1653087 g4049 i0 79.2 1.0 101 21 100.0 0 1 303 1060 1160 303 179.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus Thermoplasmatales archaeon Carp edema virus gi|2107746366|gb|CP070836.1| Archaea Viruses Archaea Viruses 60.2 179.0 0.000169 9.16e-50
5287 5287 PRJNA287283_CONTIG_5654|Carp_edema_virus|CLUSTER2_Carp_edema_virus|553|75 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_5654|Carp_edema_virus PRJNA287283_CONTIG_5654 Carp edema virus 4680 143 36 CLUSTER2_Carp_edema_virus|553|75 LC613089_1_Carp_edema_virus_FTI2020_DNA_complete_genome 552 75 PRJNA287283 5654 246 1.160622 2.85513012 Carp edema virus 1653087 Viruses Viruses 105.0 6.57e-25 Carp edema virus Non-phage NR PRJNA287283_P_NODE_5654_length_246_cov_1.160622_g5430_i0   BCT22728.1 DNA topoisomerase I [Carp edema virus] BCT22728.1 1653087 g5430 i0 61.7 0.987804878 81 31 98.8 0 4 246 14 94 243 105.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   105.0   6.57e-25
5776 5776 PRJNA287283_CONTIG_9007|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_9007|Carp_edema_virus PRJNA287283_CONTIG_9007 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA287283 9007 181 0.875 1.58375 Carp edema virus 1653087 Viruses Viruses 95.1 5.6200000000000006e-21 Carp edema virus Non-phage NR PRJNA287283_P_NODE_9007_length_181_cov_0.875000_g8783_i0   BCT22721.1 RNA polymerase subunit RPO147 [Carp edema virus] BCT22721.1 1653087 g8783 i0 76.3 0.977900552 59 14 97.8 0 179 3 914 972 177 95.1 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   95.1   5.6200000000000006e-21
6312 6312 PRJNA287283_CONTIG_1813|Carp_edema_virus|CLUSTER5_Carp_edema_virus|282|82 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_1813|Carp_edema_virus PRJNA287283_CONTIG_1813 Carp edema virus 4680 143 36 CLUSTER5_Carp_edema_virus|282|82 PRJNA318414_P_NODE_10_length_15674_cov_109.855034_g8_i0|Carp_edema_virus|NR|1.76e-230|NA 266 81 PRJNA287283 1813 504 3.155211 15.90226344 Carp edema virus 1653087 Viruses Viruses 68.9 9.44e-11 Carp edema virus Non-phage NR PRJNA287283_P_NODE_1813_length_504_cov_3.155211_g1594_i0   BCT22707.1 hypothetical protein [Carp edema virus] BCT22707.1 1653087 g1594 i0 30.5 0.976190476 164 93 94.6 7 20 496 1 148 492 68.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   68.9   9.44e-11
6530 6530 PRJNA287283_CONTIG_483|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_483|Carp_edema_virus PRJNA287283_CONTIG_483 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA287283 483 1055 4.129741 43.56876755 Carp edema virus 1653087 Viruses Viruses 181.0 3.27e-50 Carp edema virus Non-phage NR PRJNA287283_P_NODE_483_length_1055_cov_4.129741_g361_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g361 i0 36.4 0.890047393 313 182 85.0 6 965 69 3 312 939 181.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   181.0   3.27e-50
7768 7768 PRJNA287283_CONTIG_8175|Carp_edema_virus|CLUSTER12_Carp_edema_virus|176|54 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_8175|Carp_edema_virus PRJNA287283_CONTIG_8175 Carp edema virus 4680 143 36 CLUSTER12_Carp_edema_virus|176|54 PRJNA318414_P_NODE_15_length_10645_cov_116.245761_g12_i0|Carp_edema_virus|NR|2.1e-150|NA 175 54 PRJNA287283 8175 186 1.263158 2.34947388 Carp edema virus 1653087 Viruses Viruses 90.9 1.87e-19 Carp edema virus Non-phage NR PRJNA287283_P_NODE_8175_length_186_cov_1.263158_g7951_i0   BCT22616.1 poly(A)-polymerase catalytic subunit PAPL [Carp edema virus] BCT22616.1 1653087 g7951 i0 70.0 0.967741935 60 18 96.8 0 184 5 322 381 180 90.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   90.9   1.87e-19
8451 8451 PRJNA287283_CONTIG_2442|Carp_edema_virus|CLUSTER14_Carp_edema_virus|99|48 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_2442|Carp_edema_virus PRJNA287283_CONTIG_2442 Carp edema virus 4680 143 36 CLUSTER14_Carp_edema_virus|99|48 PRJEB2894_P_NODE_9_length_7063_cov_23.806488_g8_i0|Carp_edema_virus|NR|1.47e-86|NA 98 47 PRJNA287283 2442 421 1.521739 6.40652119 Carp edema virus 1653087 Viruses Viruses 79.7 4.77e-15 Carp edema virus Non-phage NR PRJNA287283_P_NODE_2442_length_421_cov_1.521739_g2219_i0   BCT22683.1 hypothetical protein [Carp edema virus] BCT22683.1 1653087 g2219 i0 33.3 0.961995249 135 88 94.8 1 412 14 29 163 405 79.7 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   79.7   4.77e-15
9290 9290 PRJNA287283_CONTIG_4803|Carp_edema_virus|CLUSTER23_Carp_edema_virus|62|54 Zebrafish jaw poxvirus Novel PRJNA287283_CONTIG_4803|Carp_edema_virus PRJNA287283_CONTIG_4803 Carp edema virus 4680 143 36 CLUSTER23_Carp_edema_virus|62|54 PRJNA318414_P_NODE_26_length_7203_cov_323.641065_g21_i0|Carp_edema_virus|NR|1.66e-43|NA 57 54 PRJNA287283 4803 279 0.99115 2.7653085 Carp edema virus 1653087 Viruses Viruses 57.8 2.41e-07 Carp edema virus Non-phage NR PRJNA287283_P_NODE_4803_length_279_cov_0.991150_g4579_i0   BCT22575.1 thymidine kinase [Carp edema virus] BCT22575.1 1653087 g4579 i0 33.0 0.946236559 88 57 94.6 1 266 3 215 300 264 57.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   57.8   2.41e-07

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;