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viruses_fish_associated_curated

7 rows where bioproject = "PRJNA283169"

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tax_genus_NTorNR 1

tax_family_NTorNR 1

bioproject 1

  • PRJNA283169 · 7 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9886 9886 PRJNA283169_CONTIG_31|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_31|parvo-like_hybrid_virus PRJNA283169_CONTIG_31 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 31 1982 12.799793 253.6918973 parvo-like hybrid virus 3367306 Viruses Viruses 1162.0 0.0 parvo-like hybrid virus Non-phage NTclustered PRJNA283169_P_NODE_31_length_1982_cov_12.799793_g23_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g23 i0 92.839 1.594349142 796 56 78.0 1 970 1764 796 1 3160 1162.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus Psittacidae aveparvovirus gi|2814138529|gb|PQ313127.1| Viruses Viruses Viruses Viruses 1162.0 231.0 0.0 3.5699999999999996e-68
9891 9891 PRJNA283169_CONTIG_128|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_128|parvo-like_hybrid_virus PRJNA283169_CONTIG_128 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 128 695 1.243034 8.6390863 parvo-like hybrid virus 3367306 Viruses Viruses 987.0 0.0 parvo-like hybrid virus Non-phage NTclustered PRJNA283169_S_NODE_128_length_695_cov_1.243034_g117_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g117 i0 92.086 1.945323741 695 55 100.0 0 1 695 64 758 1352 987.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus Psittacidae aveparvovirus gi|2814138529|gb|PQ313127.1| Viruses Viruses Viruses Viruses 987.0 207.0 0.0 4.9e-64
9892 9892 PRJNA283169_CONTIG_132|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_132|parvo-like_hybrid_virus PRJNA283169_CONTIG_132 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 132 1119 5.658879 63.32285601 parvo-like hybrid virus 3367306 Viruses Viruses 1221.0 0.0 parvo-like hybrid virus Non-phage NTclustered PRJNA283169_P_NODE_132_length_1119_cov_5.658879_g94_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g94 i0 91.705 1.574620197 880 73 79.0 0 1 880 1177 2056 1762 1221.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus Psittacidae aveparvovirus gi|2814138529|gb|PQ313127.1| Viruses Viruses Viruses Viruses 1221.0 395.0 0.0 1.15e-132
9895 9895 PRJNA283169_CONTIG_388|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_388|parvo-like_hybrid_virus PRJNA283169_CONTIG_388 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 388 400 0.683761 2.735044 parvo-like hybrid virus 3367306 Viruses Viruses 152.0 3.6700000000000005e-32 parvo-like hybrid virus Non-phage NTclustered PRJNA283169_S_NODE_388_length_400_cov_0.683761_g374_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g374 i0 95.652 0.23 92 4 23.0 0 292 383 1 92 92 152.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus Psittacidae aveparvovirus gi|2814138529|gb|PQ313127.1| Viruses Viruses Viruses Viruses 152.0 47.0 3.6700000000000005e-32 0.00372
9905 9905 PRJNA283169_CONTIG_1049|Psittacidae_aveparvovirus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_1049|Psittacidae_aveparvovirus PRJNA283169_CONTIG_1049 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 1049 260 0.132701 0.3450226 Psittacidae aveparvovirus 2794556 Viruses Viruses 152.0 1.06e-41 Psittacidae aveparvovirus Non-phage NR PRJNA283169_S_NODE_1049_length_260_cov_0.132701_g1035_i0   QTE03752.1 MAG: hypothetical protein [Psittacidae aveparvovirus] QTE03752.1 2794556 g1035 i0 82.4 0.980769231 85 15 98.1 0 5 259 334 418 255 152.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae Aveparvovirus Psittacidae aveparvovirus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus   Psittacidae aveparvovirus     Viruses   Viruses   152.0   1.06e-41
9909 9909 PRJNA283169_CONTIG_2156|parvo-like_hybrid_virus|CLUSTER1_Psittacidae_aveparvovirus|15|6 Psittacidae aveparvovirus Endogenous or not fish-associated PRJNA283169_CONTIG_2156|parvo-like_hybrid_virus PRJNA283169_CONTIG_2156 Psittacidae aveparvovirus 18 10 4 CLUSTER1_Psittacidae_aveparvovirus|15|6 MW046380_1_MAG_Avoomyvirus_meijunae_isolate_fmg67par043_genomic_sequence 15 6 PRJNA283169 2156 279 1.304348 3.63913092 parvo-like hybrid virus 3367306 Viruses Viruses 486.0 5.94e-133 parvo-like hybrid virus Non-phage NTclustered PRJNA283169_P_NODE_2156_length_279_cov_1.304348_g2094_i0   Parvo-like hybrid virus isolate SpinColumn12, partial genome gi|2814138529|gb|PQ313127.1| 3367306 g2094 i0 98.201 1.996415771 278 5 99.0 0 1 278 848 1125 557 486.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Aveparvovirus;Psittacidae aveparvovirus parvo-like hybrid virus Psittacidae aveparvovirus gi|2814138529|gb|PQ313127.1| Viruses Viruses Viruses Viruses 486.0 187.0 5.94e-133 4.29e-56
9961 9961 PRJNA283169_CONTIG_4304|Fish-associated_parvo-like_hybrid_virus|CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 Fish-associated parvo-like hybrid virus Endogenous or not fish-associated PRJNA283169_CONTIG_4304|Fish-associated_parvo-like_hybrid_virus PRJNA283169_CONTIG_4304 Fish-associated parvo-like hybrid virus 35 19 4 CLUSTER2_Fish-associated_parvo-like_hybrid_virus|14|7 PRJNA784979_S_NODE_320_length_2507_cov_3.719284_g317_i0|Fish-associated_parvo-like_hybrid_virus|NTclustered|0|NA 14 7 PRJNA283169 4304 203 1.012987 2.05636361 Fish-associated parvo-like hybrid virus 3003968 Viruses Viruses 370.0 4.3e-98 Fish-associated parvo-like hybrid virus Non-phage NTclustered PRJNA283169_P_NODE_4304_length_203_cov_1.012987_g4241_i0   MAG: Fish-associated parvo-like hybrid virus isolate fi099par4 replication protein and capsid protein genes, complete cds gi|2413975758|gb|OP933682.1| 3003968 g4241 i0 99.507 1.955665025 203 1 100.0 0 1 203 2064 1862 397 370.0 1.0 Viruses Monodnaviria Shotokuvirae Cossaviricota Quintoviricetes Piccovirales Parvoviridae   Fish-associated parvo-like hybrid virus Viruses;Monodnaviria;Shotokuvirae;Cossaviricota;Quintoviricetes;Piccovirales;Parvoviridae;Fish-associated parvo-like hybrid virus Fish-associated parvo-like hybrid virus Grus japonensis parvo-like hybrid virus gi|2413975758|gb|OP933682.1| Viruses Viruses Viruses Viruses 370.0 113.0 4.3e-98 6.56e-28

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;