RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA207719"

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Category 2

tax_family_NTorNR 1

bioproject 1

  • PRJNA207719 · 3 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
2309 2309 PRJNA207719_CONTIG_921|Zebrafish_picornavirus_2|CLUSTER1_Zebrafish_picornavirus_2|1382|320 Danio blood picornavirus/Zebrafish picornavirus 2 Novel PRJNA207719_CONTIG_921|Zebrafish_picornavirus_2 PRJNA207719_CONTIG_921 Zebrafish picornavirus 2 1369 320 1 CLUSTER1_Zebrafish_picornavirus_2|1382|320 PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA 1370 320 PRJNA207719 921 200 1.28655 2.5731 Zebrafish picornavirus 2 3063761 Viruses Viruses 298.0 2.02e-76 Zebrafish picornavirus 2 Non-phage NTclustered PRJNA207719_P_NODE_921_length_200_cov_1.286550_g901_i0   Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds gi|2551699335|gb|OK619588.1| 3063761 g901 i0 93.5 1.0 200 13 100.0 0 1 200 6653 6454 200 298.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Zebrafish picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 Zebrafish picornavirus 2 Zebrafish picornavirus 2 gi|2551699335|gb|OK619588.1| Viruses Viruses Viruses Viruses 298.0 137.0 2.02e-76 1.44e-35
10302 10302 PRJNA207719_CONTIG_136|Symphysodon_discus_adomavirus_1|CLUSTER1_Symphysodon_discus_adomavirus_1|1|1 Zebrafish adomavirus Novel PRJNA207719_CONTIG_136|Symphysodon_discus_adomavirus_1 PRJNA207719_CONTIG_136 Symphysodon discus adomavirus 1 1 1 1 CLUSTER1_Symphysodon_discus_adomavirus_1|1|1 PRJNA207719_P_NODE_136_length_615_cov_4.003413_g119_i0|Symphysodon_discus_adomavirus_1|NR|6.42e-19|NA 1 1 PRJNA207719 136 615 4.003413 24.62098995 Symphysodon discus adomavirus 1 2175118 Viruses Viruses 93.6 6.42e-19 Symphysodon discus adomavirus 1 Non-phage NR PRJNA207719_P_NODE_136_length_615_cov_4.003413_g119_i0   YP_009553058.1 LO6 [Symphysodon discus adomavirus 1] YP_009553058.1 2175118 g119 i0 44.2 0.717073171 147 61 65.9 5 546 142 85 222 441 93.6 1.0 Viruses Adomaviruses             Symphysodon discus adomavirus 1 Viruses;Adomaviruses;Zebrafish adomavirus   Symphysodon discus adomavirus 1     Viruses   Viruses   93.6   6.42e-19
10338 10338 PRJNA207719_CONTIG_902|Catfish_adomavirus|CLUSTER1_Catfish_adomavirus|1|1 Catfish adomavirus Insufficient Evidence PRJNA207719_CONTIG_902|Catfish_adomavirus PRJNA207719_CONTIG_902 Catfish adomavirus 1 1 1 CLUSTER1_Catfish_adomavirus|1|1 PRJNA207719_P_NODE_902_length_201_cov_6.889535_g882_i0|Catfish_adomavirus|NR|5.18e-11|NA 1 1 PRJNA207719 902 201 6.889535 13.84796535 Catfish adomavirus 2609875 Viruses Viruses 65.9 5.18e-11 Catfish adomavirus Non-phage NR PRJNA207719_P_NODE_902_length_201_cov_6.889535_g882_i0   DAC81156.1 TPA_asm: LO8, partial [Catfish adomavirus] DAC81156.1 2609875 g882 i0 49.2 1.820895522 63 32 94.0 0 4 192 101 163 366 65.9 1.0 Viruses Adomaviruses             Catfish adomavirus Viruses;Adomaviruses;Catfish adomavirus   Catfish adomavirus     Viruses   Viruses   65.9   5.18e-11

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;