RNAquarium Metadata Server
Institute Website Terms of Use Privacy Policy

viruses_fish_associated_curated

4 rows where bioproject = "PRJNA193544" and clusterLCA_curated = "Fish-associated picorna-like virus 3"

✎ View and edit SQL

This data as json, CSV (advanced)

clusterLCA_curated 1

  • Fish-associated picorna-like virus 3 · 4 ✖

bioproject 1

  • PRJNA193544 · 4 ✖

tax_genus_NTorNR 0

tax_family_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10009 10009 PRJNA193544_CONTIG_510|Picornavirales_N_OV_|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA193544_CONTIG_510|Picornavirales_N_OV_ PRJNA193544_CONTIG_510 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA193544 510 315 180.716783 569.2578665 Picornavirales N_OV_ 464095 Viruses Viruses 43.9 0.0348 Picornavirales N_OV_ Non-phage NR PRJNA193544_S_NODE_510_length_315_cov_180.716783_g495_i0   ASG92535.1 putative structural protein [Picornavirales N_OV_003] ASG92535.1 2016027 g495 i0 31.9 0.657142857 69 40 59.0 2 219 34 13 81 207 43.9 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Picornavirales N_OV_003 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Picornavirales N_OV_     Viruses   Viruses   43.9   0.0348
10010 10010 PRJNA193544_CONTIG_533|Fish-associated_picorna-like_virus_3|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA193544_CONTIG_533|Fish-associated_picorna-like_virus_3 PRJNA193544_CONTIG_533 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA193544 533 310 13058.8968 40482.58007 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 79.3 1.23e-14 Fish-associated picorna-like virus 3 Non-phage NR PRJNA193544_S_NODE_533_length_310_cov_13058.896797_g518_i0   WAQ80627.1 MAG: hypothetical protein [Fish-associated picorna-like virus 3] WAQ80627.1 3003959 g518 i0 45.1 0.880645161 91 46 86.1 2 282 16 2135 2223 273 79.3 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Fish-associated picorna-like virus 3     Viruses   Viruses   79.3   1.23e-14
10017 10017 PRJNA193544_CONTIG_1142|Fish-associated_picorna-like_virus_3|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA193544_CONTIG_1142|Fish-associated_picorna-like_virus_3 PRJNA193544_CONTIG_1142 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA193544 1142 239 5.114286 12.22314354 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 73.6 5.05e-13 Fish-associated picorna-like virus 3 Non-phage NR PRJNA193544_S_NODE_1142_length_239_cov_5.114286_g1127_i0   WAQ80627.1 MAG: hypothetical protein [Fish-associated picorna-like virus 3] WAQ80627.1 3003959 g1127 i0 42.5 1.757322176 73 42 91.6 0 4 222 2052 2124 420 73.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Fish-associated picorna-like virus 3     Viruses   Viruses   73.6   5.05e-13
10019 10019 PRJNA193544_CONTIG_1358|Picornavirales_N_OV_|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA193544_CONTIG_1358|Picornavirales_N_OV_ PRJNA193544_CONTIG_1358 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA193544 1358 221 266.734375 589.4829688 Picornavirales N_OV_ 464095 Viruses Viruses 43.1 0.0208 Picornavirales N_OV_ Non-phage NR PRJNA193544_S_NODE_1358_length_221_cov_266.734375_g1343_i0   ASG92535.1 putative structural protein [Picornavirales N_OV_003] ASG92535.1 2016027 g1343 i0 31.9 0.936651584 69 40 84.2 2 219 34 13 81 207 43.1 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Picornavirales N_OV_003 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Picornavirales N_OV_     Viruses   Viruses   43.1   0.0208

Advanced export

JSON shape: default, array, newline-delimited

CSV options: 

CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;