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viruses_fish_associated_curated

6 rows where bioproject = "PRJNA168635" and clusterLCA_curated = "Fish-associated picorna-like virus 3"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Fish-associated picorna-like virus 3 · 6 ✖

bioproject 1

  • PRJNA168635 · 6 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
10014 10014 PRJNA168635_CONTIG_868|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_868|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_868 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 868 816 37.794003 308.3990645 Qianjiang marna-like virus 71 3347720 Viruses Viruses 211.0 1.13e-58 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_868_length_816_cov_37.794003_g634_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g634 i0 42.9 1.011029412 275 142 97.1 5 794 3 147 417 825 211.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   211.0   1.13e-58
10015 10015 PRJNA168635_CONTIG_1125|Fish-associated_picorna-like_virus_3|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_1125|Fish-associated_picorna-like_virus_3 PRJNA168635_CONTIG_1125 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 1125 738 49.291727 363.7729453 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 89.0 5.04e-16 Fish-associated picorna-like virus 3 Non-phage NR PRJNA168635_P_NODE_1125_length_738_cov_49.291727_g840_i0   WAQ80627.1 MAG: hypothetical protein [Fish-associated picorna-like virus 3] WAQ80627.1 3003959 g840 i0 25.6 2.495934959 258 168 95.5 5 16 720 1868 2124 1842 89.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Fish-associated picorna-like virus 3     Viruses   Viruses   89.0   5.04e-16
10016 10016 PRJNA168635_CONTIG_1126|Fish-associated_picorna-like_virus_3|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_1126|Fish-associated_picorna-like_virus_3 PRJNA168635_CONTIG_1126 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 1126 738 43.969521 324.495065 Fish-associated picorna-like virus 3 3003959 Viruses Viruses 89.7 2.75e-16 Fish-associated picorna-like virus 3 Non-phage NR PRJNA168635_P_NODE_1126_length_738_cov_43.969521_g841_i0   WAQ80627.1 MAG: hypothetical protein [Fish-associated picorna-like virus 3] WAQ80627.1 3003959 g841 i0 25.6 1.048780488 258 168 95.5 5 16 720 1868 2124 774 89.7 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Fish-associated picorna-like virus 3 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Fish-associated picorna-like virus 3     Viruses   Viruses   89.7   2.75e-16
10026 10026 PRJNA168635_CONTIG_5432|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_5432|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_5432 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 5432 362 10.744409 38.89476058 Qianjiang marna-like virus 71 3347720 Viruses Viruses 83.6 7.28e-16 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_5432_length_362_cov_10.744409_g5027_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g5027 i0 43.0 0.886740331 107 60 87.8 1 334 17 188 294 321 83.6 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   83.6   7.28e-16
10029 10029 PRJNA168635_CONTIG_9512|clirnapec_virus_2|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_9512|clirnapec_virus_2 PRJNA168635_CONTIG_9512 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 9512 270 4.900452 13.2312204 clirnapec virus 2 3368191 Viruses Viruses 72.4 1.85e-12 clirnapec virus 2 Non-phage NR PRJNA168635_P_NODE_9512_length_270_cov_4.900452_g9097_i0   XII42891.1 MAG: capsid protein, partial [clirnapec virus 201] XII42891.1 3368194 g9097 i0 49.4 0.9 81 38 86.7 1 268 35 510 590 243 72.4 1.0 Viruses               clirnapec virus 201 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   clirnapec virus 2     Viruses   Viruses   72.4   1.85e-12
10041 10041 PRJNA168635_CONTIG_20215|Qianjiang_marna-like_virus_71|CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 Fish-associated picorna-like virus 3 Endogenous or not fish-associated PRJNA168635_CONTIG_20215|Qianjiang_marna-like_virus_71 PRJNA168635_CONTIG_20215 Fish-associated picorna-like virus 3 12 3 1 CLUSTER1_Fish-associated_picorna-like_virus_3|12|3 PRJEB64798_P_NODE_1247_length_1574_cov_19.076721_g909_i0|Fish-associated_picorna-like_virus_3|NR|4.87e-42|NA 12 3 PRJNA168635 20215 181 5.484848 9.92757488 Qianjiang marna-like virus 71 3347720 Viruses Viruses 69.3 6.93e-12 Qianjiang marna-like virus 71 Non-phage NR PRJNA168635_P_NODE_20215_length_181_cov_5.484848_g19799_i0   XHA88176.1 MAG: putative viral coat protein [Qianjiang marna-like virus 71] XHA88176.1 3347720 g19799 i0 56.9 0.961325967 58 25 96.1 0 180 7 278 335 174 69.3 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Marnaviridae   Qianjiang marna-like virus 71 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Fish-associated picorna-like virus 3   Qianjiang marna-like virus 71     Viruses   Viruses   69.3   6.93e-12

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;