metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJNA1241156"

4 rows where bioproject = "PRJNA1241156"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
2848	2848	PRJNA1241156_CONTIG_8959\|Zebrafish_picornavirus_2\|CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	Danio blood picornavirus/Zebrafish picornavirus 2	Novel	PRJNA1241156_CONTIG_8959\|Zebrafish_picornavirus_2	PRJNA1241156_CONTIG_8959	Zebrafish picornavirus 2	1369	320	1	CLUSTER1_Zebrafish_picornavirus_2\|1382\|320	PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0\|Zebrafish_picornavirus_2\|NR\|0\|NA	1370	320	PRJNA1241156	8959	433	13.7	59.321	Zebrafish picornavirus 2	3063761	Viruses	Viruses	586.0	9.270000000000001e-163	Zebrafish picornavirus 2	Non-phage	NTclustered	PRJNA1241156_S_NODE_8959_length_433_cov_13.700000_g8503_i0	Zebrafish picornavirus 2 isolate AU/2020 polyprotein gene, complete cds	gi\|2551699335\|gb\|OK619588.1\|	3063761	g8503	i0	91.686	0.972286374	421	34	97.0	1	3	423	6689	7108	421	586.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae	Zebrafish picornavirus 2	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2	Zebrafish picornavirus 2	Zebrafish picornavirus 2	gi\|2551699335\|gb\|OK619588.1\|	Viruses	Viruses	Viruses	Viruses	586.0	214.0	9.270000000000001e-163	2.2199999999999997e-61
10108	10108	PRJNA1241156_CONTIG_36555\|Larimichthys_croaker_adintovirus\|CLUSTER1_Larimichthys_croaker_adintovirus\|8\|6	Larimichthys croaker adintovirus	Insufficient Evidence	PRJNA1241156_CONTIG_36555\|Larimichthys_croaker_adintovirus	PRJNA1241156_CONTIG_36555	Larimichthys croaker adintovirus	19	14	10	CLUSTER1_Larimichthys_croaker_adintovirus\|8\|6	PRJNA1249042_S_NODE_6306_length_354_cov_2.350482_g6092_i0\|Adintovirus_corythoichthys13919\|NR\|1.1e-28\|NA	7	6	PRJNA1241156	36555	311	10.156716	31.58738676	Larimichthys croaker adintovirus	2609857	Viruses	Viruses	135.0	7.92e-36	Larimichthys croaker adintovirus	Non-phage	NR	PRJNA1241156_S_NODE_36555_length_311_cov_10.156716_g36095_i0	DAC81309.1 TPA_asm: integrase [Larimichthys croaker adintovirus]	DAC81309.1	2609857	g36095	i0	64.6	0.926045016	96	34	92.6	0	21	308	177	272	288	135.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Larimichthys croaker adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Larimichthys croaker adintovirus		Larimichthys croaker adintovirus			Viruses		Viruses		135.0		7.92e-36
10131	10131	PRJNA1241156_CONTIG_12547\|Polintoviricetes\|CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA1241156_CONTIG_12547\|Polintoviricetes	PRJNA1241156_CONTIG_12547	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	PRJNA1150539_S_NODE_13470_length_412_cov_4.790560_g12875_i0\|Polintoviricetes\|NR\|4.65e-24\|NA	7	6	PRJNA1241156	12547	404	4.498615	18.1744046	Polintoviricetes	2842244	Viruses	Viruses	76.3	6.66e-14	Polintoviricetes	Non-phage	NR	PRJNA1241156_S_NODE_12547_length_404_cov_4.498615_g12087_i0	YP_010796956.1 FtsK [Terrapene box turtle adintovirus]	YP_010796956.1	2597808	g12087	i0	64.7	0.764851485	51	18	37.9	0	252	404	153	203	309	77.0	0.990909091	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes			Betadintovirus terrapene	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Polintoviricetes			Viruses		Viruses		76.3		6.66e-14
10148	10148	PRJNA1241156_CONTIG_71844\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA1241156_CONTIG_71844\|Astyanax_tetra_cavefish_adintovirus	PRJNA1241156_CONTIG_71844	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	PRJNA1150539_S_NODE_13470_length_412_cov_4.790560_g12875_i0\|Polintoviricetes\|NR\|4.65e-24\|NA	7	6	PRJNA1241156	71844	221	4.292135	9.48561835	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	59.7	1.4e-08	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA1241156_S_NODE_71844_length_221_cov_4.292135_g71384_i0	DAC81259.1 TPA_asm: FtsK [Astyanax tetra cavefish adintovirus]	DAC81259.1	2609866	g71384	i0	72.2	0.488687783	36	10	48.9	0	8	115	185	220	108	59.7	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Astyanax tetra cavefish adintovirus			Viruses		Viruses		59.7		1.4e-08

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;