RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where bioproject = "PRJNA1237347" and clusterLCA_curated = "Zebrafish picornavirus 1"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish picornavirus 1 · 4 ✖

bioproject 1

  • PRJNA1237347 · 4 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4358 4358 PRJNA1237347_CONTIG_355640|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1237347_CONTIG_355640|Cyprivirus_A PRJNA1237347_CONTIG_355640 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1237347 355640 300 1.39207 4.17621 Cyprivirus A 2304617 Viruses Viruses 483.0 8.350000000000001e-132 Cyprivirus A Non-phage NTclustered PRJNA1237347_P_NODE_355640_length_300_cov_1.392070_g349067_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g349067 i0 95.667 3.0 300 13 100.0 0 1 300 1062 1361 900 483.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 483.0 181.0 8.350000000000001e-132 1.34e-50
4360 4360 PRJNA1237347_CONTIG_494418|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1237347_CONTIG_494418|Cyprivirus_A PRJNA1237347_CONTIG_494418 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1237347 494418 248 1.4 3.472 Cyprivirus A 2304617 Viruses Viruses 453.0 5.2600000000000005e-123 Cyprivirus A Non-phage NTclustered PRJNA1237347_P_NODE_494418_length_248_cov_1.400000_g487845_i0   TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome gi|1990739381|tpg|BK011179.1| 2563826 g487845 i0 99.597 3.012096774 248 1 100.0 0 1 248 5594 5841 747 453.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1990739381|tpg|BK011179.1| Viruses Viruses Viruses Viruses 453.0 165.0 5.2600000000000005e-123 2.98e-45
4361 4361 PRJNA1237347_CONTIG_506981|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1237347_CONTIG_506981|Cyprivirus_A PRJNA1237347_CONTIG_506981 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1237347 506981 247 0.885057 2.18609079 Cyprivirus A 2304617 Viruses Viruses 418.0 1.91e-112 Cyprivirus A Non-phage NTclustered PRJNA1237347_P_NODE_506981_length_247_cov_0.885057_g500408_i0   TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome gi|1990739381|tpg|BK011179.1| 2563826 g500408 i0 97.166 3.0 247 7 100.0 0 1 247 2425 2179 741 418.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1990739381|tpg|BK011179.1| Viruses Viruses Viruses Viruses 418.0 160.0 1.91e-112 1.6900000000000001e-43
4362 4362 PRJNA1237347_CONTIG_533083|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1237347_CONTIG_533083|Cyprivirus_A PRJNA1237347_CONTIG_533083 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1237347 533083 244 0.760234 1.85497096 Cyprivirus A 2304617 Viruses Viruses 435.0 1.87e-117 Cyprivirus A Non-phage NTclustered PRJNA1237347_P_NODE_533083_length_244_cov_0.760234_g526510_i0   TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome gi|1990739381|tpg|BK011179.1| 2563826 g526510 i0 98.77 2.975409836 244 3 100.0 0 1 244 5111 4868 726 435.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1990739381|tpg|BK011179.1| Viruses Viruses Viruses Viruses 435.0 165.0 1.87e-117 3.9e-45

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;