RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA1200306" and clusterLCA_curated = "Zebrafish jaw poxvirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw poxvirus · 3 ✖

bioproject 1

  • PRJNA1200306 · 3 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
6438 6438 PRJNA1200306_CONTIG_22419|Carp_edema_virus|CLUSTER5_Carp_edema_virus|282|82 Zebrafish jaw poxvirus Novel PRJNA1200306_CONTIG_22419|Carp_edema_virus PRJNA1200306_CONTIG_22419 Carp edema virus 4680 143 36 CLUSTER5_Carp_edema_virus|282|82 PRJNA318414_P_NODE_10_length_15674_cov_109.855034_g8_i0|Carp_edema_virus|NR|1.76e-230|NA 266 81 PRJNA1200306 22419 249 0.875 2.17875 Carp edema virus 1653087 Viruses Viruses 49.3 8.35e-05 Carp edema virus Non-phage NR PRJNA1200306_P_NODE_22419_length_249_cov_0.875000_g22242_i0   BCT22700.1 hypothetical protein [Carp edema virus] BCT22700.1 1653087 g22242 i0 41.1 0.879518072 73 31 83.1 2 208 2 30 94 219 49.3 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   49.3   8.35e-05
6682 6682 PRJNA1200306_CONTIG_16514|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA1200306_CONTIG_16514|Carp_edema_virus PRJNA1200306_CONTIG_16514 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA1200306 16514 315 2.438017 7.67975355 Carp edema virus 1653087 Viruses Viruses 73.2 1.25e-12 Carp edema virus Non-phage NR PRJNA1200306_P_NODE_16514_length_315_cov_2.438017_g16337_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g16337 i0 39.0 1.0 105 63 100.0 1 315 1 176 279 315 73.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   73.2   1.25e-12
8750 8750 PRJNA1200306_CONTIG_24850|Carp_edema_virus|CLUSTER16_Carp_edema_virus|89|60 Zebrafish jaw poxvirus Novel PRJNA1200306_CONTIG_24850|Carp_edema_virus PRJNA1200306_CONTIG_24850 Carp edema virus 4680 143 36 CLUSTER16_Carp_edema_virus|89|60 PRJNA318414_P_NODE_16_length_10532_cov_251.265543_g13_i0|Carp_edema_virus|NR|5.62e-42|NA 79 59 PRJNA1200306 24850 229 2.74359 6.2828211 Carp edema virus 1653087 Viruses Viruses 65.9 3.15e-11 Carp edema virus Non-phage NR PRJNA1200306_P_NODE_24850_length_229_cov_2.743590_g24673_i0   BCT22744.1 hypothetical protein [Carp edema virus] BCT22744.1 1653087 g24673 i0 62.3 0.694323144 53 20 69.4 0 208 50 3 55 159 65.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   65.9   3.15e-11

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;