RNAquarium Metadata Server
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viruses_fish_associated_curated

4 rows where bioproject = "PRJNA1200306" and clusterLCA_curated = "Zebrafish jaw picornavirus"

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tax_genus_NTorNR 3

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw picornavirus · 4 ✖

bioproject 1

  • PRJNA1200306 · 4 ✖

Category 1

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8380 8380 PRJNA1200306_CONTIG_6985|tropivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1200306_CONTIG_6985|tropivirus_A1 PRJNA1200306_CONTIG_6985 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1200306 6985 554 1.686071 9.34083334 tropivirus A1 2116178 Viruses Viruses 94.4 1.18e-18 tropivirus A1 Non-phage NR PRJNA1200306_P_NODE_6985_length_554_cov_1.686071_g6809_i0   YP_010796386.1 polyprotein [tropivirus A1] YP_010796386.1 2116178 g6809 i0 41.9 0.736462094 136 75 71.5 2 398 3 1295 1430 408 94.4 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Tropivirus Tropivirus awaski Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   tropivirus A1     Viruses   Viruses   94.4   1.18e-18
8389 8389 PRJNA1200306_CONTIG_10655|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1200306_CONTIG_10655|Coleura_bat_picornavirus PRJNA1200306_CONTIG_10655 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1200306 10655 421 1.87931 7.9118951 Coleura bat picornavirus 3141868 Viruses Viruses 134.0 1.86e-33 Coleura bat picornavirus Non-phage NR PRJNA1200306_P_NODE_10655_length_421_cov_1.879310_g10478_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g10478 i0 54.3 2.992874109 140 57 98.3 5 3 416 1968 2102 1260 134.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   134.0   1.86e-33
8393 8393 PRJNA1200306_CONTIG_14547|ludopivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1200306_CONTIG_14547|ludopivirus_A1 PRJNA1200306_CONTIG_14547 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1200306 14547 344 1.667897 5.73756568 ludopivirus A1 2079465 Viruses Viruses 136.0 1.47e-34 ludopivirus A1 Non-phage NR PRJNA1200306_P_NODE_14547_length_344_cov_1.667897_g14370_i0   QUS52515.1 polyprotein [ludopivirus A1] QUS52515.1 2079465 g14370 i0 57.0 0.994186047 114 49 99.4 0 1 342 2237 2350 342 136.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Ludopivirus Ludopivirus agrewhifrogo Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   ludopivirus A1     Viruses   Viruses   136.0   1.47e-34
8399 8399 PRJNA1200306_CONTIG_24510|Kobuvirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1200306_CONTIG_24510|Kobuvirus PRJNA1200306_CONTIG_24510 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1200306 24510 241 1.833333 4.41833253 Kobuvirus 194960 Viruses Viruses 47.8 0.000453 Kobuvirus Non-phage NR PRJNA1200306_P_NODE_24510_length_241_cov_1.833333_g24333_i0   YP_009167352.1 2B [Kobuvirus cattle/Kagoshima-2-24-KoV/2015/JPN] YP_009167352.1 1659219 g24333 i0 40.9 4.182572614 66 36 78.4 1 40 228 140 205 1008 47.8 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus dekago Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Kobuvirus     Viruses   Viruses   47.8   0.000453

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;