viruses_fish_associated_curated
3 rows where bioproject = "PRJNA1189340" and tax_species_NTorNR = "Wuhan sharpbelly picornavirus 1"
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| Link | rowid ▼ | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 2094 | 2094 | PRJNA1189340_CONTIG_165|Wuhan_sharpbelly_picornavirus_1|CLUSTER1_Zebrafish_picornavirus_2|1382|320 | Danio blood picornavirus/Zebrafish picornavirus 2 | Novel | PRJNA1189340_CONTIG_165|Wuhan_sharpbelly_picornavirus_1 | PRJNA1189340_CONTIG_165 | Zebrafish picornavirus 2 | 1369 | 320 | 1 | CLUSTER1_Zebrafish_picornavirus_2|1382|320 | PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA | 1370 | 320 | PRJNA1189340 | 165 | 1125 | 2.145437 | 24.13616625 | Wuhan sharpbelly picornavirus 1 | 2116200 | Viruses | Viruses | 239.0 | 1.79e-66 | Wuhan sharpbelly picornavirus 1 | Non-phage | NR | PRJNA1189340_P_NODE_165_length_1125_cov_2.145437_g134_i0 | AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] | AVM87439.1 | 2116200 | g134 | i0 | 35.1 | 1.162666667 | 436 | 180 | 99.7 | 7 | 1125 | 4 | 733 | 1127 | 1308 | 239.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Wuhan sharpbelly picornavirus 1 | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 | Wuhan sharpbelly picornavirus 1 | Viruses | Viruses | 239.0 | 1.79e-66 | |||||||||
| 2437 | 2437 | PRJNA1189340_CONTIG_1746|Wuhan_sharpbelly_picornavirus_1|CLUSTER1_Zebrafish_picornavirus_2|1382|320 | Danio blood picornavirus/Zebrafish picornavirus 2 | Novel | PRJNA1189340_CONTIG_1746|Wuhan_sharpbelly_picornavirus_1 | PRJNA1189340_CONTIG_1746 | Zebrafish picornavirus 2 | 1369 | 320 | 1 | CLUSTER1_Zebrafish_picornavirus_2|1382|320 | PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA | 1370 | 320 | PRJNA1189340 | 1746 | 303 | 0.947826 | 2.87191278 | Wuhan sharpbelly picornavirus 1 | 2116200 | Viruses | Viruses | 134.0 | 7.289999999999999e-34 | Wuhan sharpbelly picornavirus 1 | Non-phage | NR | PRJNA1189340_P_NODE_1746_length_303_cov_0.947826_g1690_i0 | AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] | AVM87439.1 | 2116200 | g1690 | i0 | 62.6 | 0.98019802 | 99 | 37 | 98.0 | 0 | 298 | 2 | 102 | 200 | 297 | 134.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Wuhan sharpbelly picornavirus 1 | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 | Wuhan sharpbelly picornavirus 1 | Viruses | Viruses | 134.0 | 7.289999999999999e-34 | |||||||||
| 2563 | 2563 | PRJNA1189340_CONTIG_3009|Wuhan_sharpbelly_picornavirus_1|CLUSTER1_Zebrafish_picornavirus_2|1382|320 | Danio blood picornavirus/Zebrafish picornavirus 2 | Novel | PRJNA1189340_CONTIG_3009|Wuhan_sharpbelly_picornavirus_1 | PRJNA1189340_CONTIG_3009 | Zebrafish picornavirus 2 | 1369 | 320 | 1 | CLUSTER1_Zebrafish_picornavirus_2|1382|320 | PRJNA924006_P_NODE_1_length_7278_cov_16.682998_g0_i0|Zebrafish_picornavirus_2|NR|0|NA | 1370 | 320 | PRJNA1189340 | 3009 | 242 | 1.633136 | 3.95218912 | Wuhan sharpbelly picornavirus 1 | 2116200 | Viruses | Viruses | 94.0 | 3.53e-20 | Wuhan sharpbelly picornavirus 1 | Non-phage | NR | PRJNA1189340_P_NODE_3009_length_242_cov_1.633136_g2953_i0 | AVM87439.1 polyprotein [Wuhan sharpbelly picornavirus 1] | AVM87439.1 | 2116200 | g2953 | i0 | 58.0 | 1.004132231 | 81 | 31 | 96.7 | 1 | 241 | 8 | 443 | 523 | 243 | 94.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Wuhan sharpbelly picornavirus 1 | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Danio blood picornavirus/Zebrafish picornavirus 2 | Wuhan sharpbelly picornavirus 1 | Viruses | Viruses | 94.0 | 3.53e-20 |
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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);; CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);; CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);; CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);; CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);; CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);; CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;