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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA1174776"

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tax_genus_NTorNR 2

clusterLCA_curated 2

tax_family_NTorNR 1

bioproject 1

  • PRJNA1174776 · 3 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9114 9114 PRJNA1174776_CONTIG_1439|Salarius_guttatus_piscichuvirus|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA1174776_CONTIG_1439|Salarius_guttatus_piscichuvirus PRJNA1174776_CONTIG_1439 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA1174776 1439 454 4.603406 20.89946324 Salarius guttatus piscichuvirus 2951531 Viruses Viruses 80.1 3.67e-14 Salarius guttatus piscichuvirus Non-phage NR PRJNA1174776_S_NODE_1439_length_454_cov_4.603406_g1339_i0   UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus] UVF58767.1 2951531 g1339 i0 36.5 1.837004405 126 76 80.6 3 2 367 7 132 834 80.1 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus Salarius guttatus piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Salarius guttatus piscichuvirus     Viruses   Viruses   80.1   3.67e-14
9190 9190 PRJNA1174776_CONTIG_13187|Chuviridae_sp.|CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 Salarius guttatus piscichuvirus Endogenous or not fish-associated PRJNA1174776_CONTIG_13187|Chuviridae_sp. PRJNA1174776_CONTIG_13187 Salarius guttatus piscichuvirus 67 58 5 CLUSTER1_Salarius_guttatus_piscichuvirus|63|56 PRJNA649806_P_NODE_3355_length_644_cov_1.443082_g3086_i0|Salarius_guttatus_piscichuvirus|NR|7.17e-28|NA 63 56 PRJNA1174776 13187 209 3.542169 7.40313321 Chuviridae sp. 2809007 Viruses Viruses 60.8 9.94e-09 Chuviridae sp. Non-phage NR PRJNA1174776_S_NODE_13187_length_209_cov_3.542169_g13086_i0   XNT20836.1 MAG: RNA-dependent RNA polymerase [Chuviridae sp.] XNT20836.1 2809007 g13086 i0 50.0 1.80861244 68 33 97.6 1 4 207 141 207 378 60.8 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae   Chuviridae sp. Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;Salarius guttatus piscichuvirus   Chuviridae sp.     Viruses   Viruses   60.8   9.94e-09
9671 9671 PRJNA1174776_CONTIG_16009|Chuvivirus|CLUSTER2_Chuvivirus|39|39 Chuvivirus Endogenous or not fish-associated PRJNA1174776_CONTIG_16009|Chuvivirus PRJNA1174776_CONTIG_16009 Chuvivirus 116 110 4 CLUSTER2_Chuvivirus|39|39 PRJNA896643_S_NODE_1019_length_399_cov_2.776243_g949_i0|Chuvivirus|NR|3.94e-45|NA 39 39 PRJNA1174776 16009 194 2.801325 5.4345705 Chuvivirus 2842604 Viruses Viruses 97.4 8.17e-22 Chuvivirus Non-phage NR PRJNA1174776_S_NODE_16009_length_194_cov_2.801325_g15908_i0   WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] WET19887.1 3032433 g15908 i0 71.4 1.948453608 63 18 97.4 0 3 191 303 365 378 97.4 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Freshwater turtle neural virus 1 Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Chuvivirus     Viruses   Viruses   97.4   8.17e-22

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;