viruses_fish_associated_curated
3 rows where bioproject = "PRJNA1144090" and clusterLCA_curated = "Zebrafish gut calicivirus"
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| Link | rowid ▼ | contig_withLCA_withcluster | clusterLCA_curated | Category | contig_withLCA | shortcontigname | clusterLCA | clusterLCAcurated_contigcount | clusterLCAcurated_bioprojectcount | clusterLCAcurated_clustercount | shortclustername | cluster | clustersize | bioprojectsbycluster | bioproject | node | length | coverage | rel_abundance | taxname_lca_NTorNR | taxid_lca_NTorNR | taxoncategory_NTorNR | taxoncategorysimple_NTorNR | bits_NTorNR | evalue_NTorNR | viruscategory_NTorNR | viruscategorysimple_NTorNR | analysis_used | contig_name | lowcoverage_flag | target_title_NTorNR | target_NTorNR | taxid_NTorNR | gene_NTorNR | allele_NTorNR | pident_NTorNR | sumperc_cov_NTorNR | alnlen_NTorNR | mismatch_NTorNR | qcov_NTorNR | gapopen_NTorNR | qstart_NTorNR | qend_NTorNR | tstart_NTorNR | tend_NTorNR | sumalnlen_NTorNR | maxbits_NTorNR | bits_percmax_NTorNR | tax_superkingdom_NTorNR | tax_clade_NTorNR | tax_kingdom_NTorNR | tax_phylum_NTorNR | tax_class_NTorNR | tax_order_NTorNR | tax_family_NTorNR | tax_genus_NTorNR | tax_species_NTorNR | classification | taxname_lca_NTclustered | taxname_lca_NR | target_NTclustered | taxoncategory_NTclustered | taxoncategory_NR | taxoncategorysimple_NTclustered | taxoncategorysimple_NR | bits_NTclustered | bits_NR | evalue_NTclustered | evalue_NR |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9485 | 9485 | PRJNA1144090_CONTIG_103|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 | Zebrafish gut calicivirus | Novel | PRJNA1144090_CONTIG_103|Barramundi_calicivirus_1 | PRJNA1144090_CONTIG_103 | Barramundi calicivirus 1 | 48 | 14 | 1 | CLUSTER1_Barramundi_calicivirus_1|53|15 | PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA | 49 | 15 | PRJNA1144090 | 103 | 4134 | 5.010835 | 207.1479189 | Barramundi calicivirus 1 | 3162777 | Viruses | Viruses | 972.0 | 0.0 | Barramundi calicivirus 1 | Non-phage | NR | PRJNA1144090_P_NODE_103_length_4134_cov_5.010835_g87_i0 | XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] | XBS25272.1 | 3162777 | g87 | i0 | 41.7 | 0.957910015 | 1320 | 694 | 91.9 | 25 | 3798 | 1 | 199 | 1496 | 3960 | 972.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Caliciviridae | Barramundi calicivirus 1 | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus | Barramundi calicivirus 1 | Viruses | Viruses | 972.0 | 0.0 | ||||||||
| 9487 | 9487 | PRJNA1144090_CONTIG_633|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 | Zebrafish gut calicivirus | Novel | PRJNA1144090_CONTIG_633|Barramundi_calicivirus_1 | PRJNA1144090_CONTIG_633 | Barramundi calicivirus 1 | 48 | 14 | 1 | CLUSTER1_Barramundi_calicivirus_1|53|15 | PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA | 49 | 15 | PRJNA1144090 | 633 | 2697 | 14.560213 | 392.6889446 | Barramundi calicivirus 1 | 3162777 | Viruses | Viruses | 553.0 | 3.22e-169 | Barramundi calicivirus 1 | Non-phage | NR | PRJNA1144090_P_NODE_633_length_2697_cov_14.560213_g565_i0 | XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] | XBS25272.1 | 3162777 | g565 | i0 | 42.3 | 0.809788654 | 728 | 396 | 79.5 | 11 | 2696 | 552 | 1487 | 2203 | 2184 | 553.0 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Caliciviridae | Barramundi calicivirus 1 | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus | Barramundi calicivirus 1 | Viruses | Viruses | 553.0 | 3.22e-169 | ||||||||
| 9517 | 9517 | PRJNA1144090_CONTIG_33203|Fujian_spotted_paddle-tail_newt_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 | Zebrafish gut calicivirus | Novel | PRJNA1144090_CONTIG_33203|Fujian_spotted_paddle-tail_newt_calicivirus | PRJNA1144090_CONTIG_33203 | Barramundi calicivirus 1 | 48 | 14 | 1 | CLUSTER1_Barramundi_calicivirus_1|53|15 | PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA | 49 | 15 | PRJNA1144090 | 33203 | 453 | 4.081579 | 18.48955287 | Fujian spotted paddle-tail newt calicivirus | 2116168 | Viruses | Viruses | 68.2 | 5.3e-10 | Fujian spotted paddle-tail newt calicivirus | Non-phage | NR | PRJNA1144090_P_NODE_33203_length_453_cov_4.081579_g32668_i0 | AVM87224.1 polyprotein [Fujian spotted paddle-tail newt calicivirus] | AVM87224.1 | 2116168 | g32668 | i0 | 32.4 | 0.960264901 | 145 | 85 | 89.4 | 5 | 34 | 438 | 42 | 183 | 435 | 68.2 | 1.0 | Viruses | Riboviria | Orthornavirae | Pisuviricota | Pisoniviricetes | Picornavirales | Caliciviridae | Fujian spotted paddle-tail newt calicivirus | Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus | Fujian spotted paddle-tail newt calicivirus | Viruses | Viruses | 68.2 | 5.3e-10 |
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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);; CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);; CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);; CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);; CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);; CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);; CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;