RNAquarium Metadata Server
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viruses_fish_associated_curated

3 rows where bioproject = "PRJNA1120203" and clusterLCA_curated = "Zebrafish gut calicivirus"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish gut calicivirus · 3 ✖

bioproject 1

  • PRJNA1120203 · 3 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9514 9514 PRJNA1120203_CONTIG_27055|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1120203_CONTIG_27055|Barramundi_calicivirus_1 PRJNA1120203_CONTIG_27055 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1120203 27055 463 2.117949 9.80610387 Barramundi calicivirus 1 3162777 Viruses Viruses 190.0 9.62e-53 Barramundi calicivirus 1 Non-phage NR PRJNA1120203_P_NODE_27055_length_463_cov_2.117949_g26041_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g26041 i0 59.9 0.98488121 152 61 98.5 0 458 3 1306 1457 456 190.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   190.0   9.62e-53
9525 9525 PRJNA1120203_CONTIG_68046|Yancheng_osbecks_grenadier_anchovy_calicivirus|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1120203_CONTIG_68046|Yancheng_osbecks_grenadier_anchovy_calicivirus PRJNA1120203_CONTIG_68046 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1120203 68046 272 1.889447 5.13929584 Yancheng osbecks grenadier anchovy calicivirus 2116160 Viruses Viruses 67.4 1.15e-10 Yancheng osbecks grenadier anchovy calicivirus Non-phage NR PRJNA1120203_P_NODE_68046_length_272_cov_1.889447_g67030_i0   AVM87550.1 polyprotein, partial [Yancheng osbecks grenadier anchovy calicivirus] AVM87550.1 2116160 g67030 i0 38.2 1.941176471 89 54 97.1 1 269 6 727 815 528 67.4 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Yancheng osbecks grenadier anchovy calicivirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Yancheng osbecks grenadier anchovy calicivirus     Viruses   Viruses   67.4   1.15e-10
9526 9526 PRJNA1120203_CONTIG_73370|Barramundi_calicivirus_1|CLUSTER1_Barramundi_calicivirus_1|53|15 Zebrafish gut calicivirus Novel PRJNA1120203_CONTIG_73370|Barramundi_calicivirus_1 PRJNA1120203_CONTIG_73370 Barramundi calicivirus 1 48 14 1 CLUSTER1_Barramundi_calicivirus_1|53|15 PRJNA738523_P_NODE_1_length_7247_cov_15.105241_g0_i0|Barramundi_calicivirus_1|NR|0|NA 49 15 PRJNA1120203 73370 261 1.212766 3.16531926 Barramundi calicivirus 1 3162777 Viruses Viruses 88.2 5.03e-18 Barramundi calicivirus 1 Non-phage NR PRJNA1120203_P_NODE_73370_length_261_cov_1.212766_g72354_i0   XBS25272.1 MAG: ORF1 protein [Barramundi calicivirus 1] XBS25272.1 3162777 g72354 i0 51.4 0.850574713 74 36 85.1 0 1 222 1543 1616 222 88.2 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Caliciviridae   Barramundi calicivirus 1 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Caliciviridae;Zebrafish gut calicivirus   Barramundi calicivirus 1     Viruses   Viruses   88.2   5.03e-18

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;