RNAquarium Metadata Server
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viruses_fish_associated_curated

5 rows where bioproject = "PRJNA1112809" and clusterLCA_curated = "Pimephales minnow adintovirus"

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tax_family_NTorNR 1

clusterLCA_curated 1

  • Pimephales minnow adintovirus · 5 ✖

bioproject 1

  • PRJNA1112809 · 5 ✖

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
9879 9879 PRJNA1112809_CONTIG_99234|Pimephales_minnow_adintovirus|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_99234|Pimephales_minnow_adintovirus PRJNA1112809_CONTIG_99234 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJNA1112809 99234 333 0.907692 3.02261436 Pimephales minnow adintovirus 2609864 Viruses Viruses 128.0 2.89e-34 Pimephales minnow adintovirus Non-phage NR PRJNA1112809_P_NODE_99234_length_333_cov_0.907692_g95959_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g95959 i0 55.0 2.0 111 50 100.0 0 333 1 67 177 666 129.0 0.992248062 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   128.0   2.89e-34
9882 9882 PRJNA1112809_CONTIG_192420|Adintovirus_pavo15764|CLUSTER4_Pimephales_minnow_adintovirus|18|15 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_192420|Adintovirus_pavo15764 PRJNA1112809_CONTIG_192420 Pimephales minnow adintovirus 168 104 20 CLUSTER4_Pimephales_minnow_adintovirus|18|15 PRJNA523184_P_NODE_1012_length_470_cov_4.248276_g948_i0|Pimephales_minnow_adintovirus|NR|7.76e-34|NA 18 15 PRJNA1112809 192420 241 1.22619 2.9551179 Adintovirus pavo15764 3115938 Viruses Viruses 93.6 2.0900000000000002e-21 Adintovirus pavo15764 Non-phage NR PRJNA1112809_P_NODE_192420_length_241_cov_1.226190_g189145_i0   DBA50340.1 MAG TPA_asm: PacK [Adintovirus pavo15764] DBA50340.1 3115938 g189145 i0 52.5 2.987551867 80 38 99.6 0 241 2 72 151 720 93.6 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Adintovirus pavo15764 Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Adintovirus pavo15764     Viruses   Viruses   93.6   2.0900000000000002e-21
9941 9941 PRJNA1112809_CONTIG_153932|Pimephales_minnow_adintovirus|CLUSTER5_Pimephales_minnow_adintovirus|15|11 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_153932|Pimephales_minnow_adintovirus PRJNA1112809_CONTIG_153932 Pimephales minnow adintovirus 168 104 20 CLUSTER5_Pimephales_minnow_adintovirus|15|11 PRJNA745923_S_NODE_10260_length_324_cov_1.163701_g9928_i0|Pimephales_minnow_adintovirus|NR|6.57e-29|NA 15 11 PRJNA1112809 153932 260 1.160428 3.0171128 Pimephales minnow adintovirus 2609864 Viruses Viruses 107.0 1.94e-26 Pimephales minnow adintovirus Non-phage NR PRJNA1112809_P_NODE_153932_length_260_cov_1.160428_g150657_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g150657 i0 61.2 0.980769231 85 33 98.1 0 257 3 62 146 255 107.0 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   107.0   1.94e-26
9942 9942 PRJNA1112809_CONTIG_189572|Pimephales_minnow_adintovirus|CLUSTER5_Pimephales_minnow_adintovirus|15|11 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_189572|Pimephales_minnow_adintovirus PRJNA1112809_CONTIG_189572 Pimephales minnow adintovirus 168 104 20 CLUSTER5_Pimephales_minnow_adintovirus|15|11 PRJNA745923_S_NODE_10260_length_324_cov_1.163701_g9928_i0|Pimephales_minnow_adintovirus|NR|6.57e-29|NA 15 11 PRJNA1112809 189572 242 0.940828 2.27680376 Pimephales minnow adintovirus 2609864 Viruses Viruses 92.8 5.08e-21 Pimephales minnow adintovirus Non-phage NR PRJNA1112809_P_NODE_189572_length_242_cov_0.940828_g186297_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g186297 i0 58.2 0.979338843 79 33 97.9 0 4 240 53 131 237 92.8 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   92.8   5.08e-21
10090 10090 PRJNA1112809_CONTIG_109286|Pimephales_minnow_adintovirus|CLUSTER6_Pimephales_minnow_adintovirus|10|9 Pimephales minnow adintovirus Endogenous or not fish-associated PRJNA1112809_CONTIG_109286|Pimephales_minnow_adintovirus PRJNA1112809_CONTIG_109286 Pimephales minnow adintovirus 168 104 20 CLUSTER6_Pimephales_minnow_adintovirus|10|9 PRJEB66218_P_NODE_83127_length_345_cov_0.922535_g80700_i0|Pimephales_minnow_adintovirus|NR|3.45e-17|NA 10 9 PRJNA1112809 109286 314 1.095436 3.43966904 Pimephales minnow adintovirus 2609864 Viruses Viruses 75.1 7.77e-14 Pimephales minnow adintovirus Non-phage NR PRJNA1112809_P_NODE_109286_length_314_cov_1.095436_g106011_i0   DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus] DAC81394.1 2609864 g106011 i0 66.1 0.535031847 56 19 53.5 0 313 146 176 231 168 75.1 1.0 Viruses Varidnaviria Bamfordvirae Preplasmiviricota Polintoviricetes Orthopolintovirales Adintoviridae   Pimephales minnow adintovirus Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus   Pimephales minnow adintovirus     Viruses   Viruses   75.1   7.77e-14

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;