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viruses_fish_associated_curated

10 rows where bioproject = "PRJNA1111146" and clusterLCA_curated = "Zebrafish jaw poxvirus"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish jaw poxvirus · 10 ✖

bioproject 1

  • PRJNA1111146 · 10 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
4981 4981 PRJNA1111146_CONTIG_149537|Carp_edema_virus|CLUSTER1_Carp_edema_virus|632|87 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_149537|Carp_edema_virus PRJNA1111146_CONTIG_149537 Carp edema virus 4680 143 36 CLUSTER1_Carp_edema_virus|632|87 PRJNA1075480_S_NODE_3_length_24555_cov_43.250551_g1_i0|Carp_edema_virus|NR|0|NA 629 87 PRJNA1111146 149537 221 1.178571 2.60464191 Carp edema virus 1653087 Viruses Viruses 47.0 0.000898 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_149537_length_221_cov_1.178571_g148399_i0   BCT22646.1 virion core protein P4b [Carp edema virus] BCT22646.1 1653087 g148399 i0 37.5 0.760180995 56 31 76.0 1 11 178 6 57 168 47.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   47.0   0.000898
5402 5402 PRJNA1111146_CONTIG_13499|Carp_edema_virus|CLUSTER2_Carp_edema_virus|553|75 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_13499|Carp_edema_virus PRJNA1111146_CONTIG_13499 Carp edema virus 4680 143 36 CLUSTER2_Carp_edema_virus|553|75 LC613089_1_Carp_edema_virus_FTI2020_DNA_complete_genome 552 75 PRJNA1111146 13499 429 2.132979 9.15047991 Carp edema virus 1653087 Viruses Viruses 100.0 8.4e-23 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_13499_length_429_cov_2.132979_g12365_i0   BCT22606.1 hypothetical protein AL387_gp060 [Carp edema virus] BCT22606.1 1653087 g12365 i0 44.8 0.608391608 87 48 60.8 0 420 160 177 263 261 100.0 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   100.0   8.4e-23
5898 5898 PRJNA1111146_CONTIG_178193|Carp_edema_virus|CLUSTER3_Carp_edema_virus|359|69 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_178193|Carp_edema_virus PRJNA1111146_CONTIG_178193 Carp edema virus 4680 143 36 CLUSTER3_Carp_edema_virus|359|69 PRJNA318414_P_NODE_2_length_28050_cov_65.213304_g1_i0|Carp_edema_virus|NR|0|NA 358 69 PRJNA1111146 178193 211 1.436709 3.03145599 Carp edema virus 1653087 Viruses Viruses 62.8 2.16e-09 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_178193_length_211_cov_1.436709_g177055_i0   BCT22720.1 poxvirus B22R superfamily protein [Carp edema virus] BCT22720.1 1653087 g177055 i0 39.7 0.966824645 68 41 96.7 0 8 211 697 764 204 62.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   62.8   2.16e-09
6471 6471 PRJNA1111146_CONTIG_158345|Carp_edema_virus|CLUSTER5_Carp_edema_virus|282|82 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_158345|Carp_edema_virus PRJNA1111146_CONTIG_158345 Carp edema virus 4680 143 36 CLUSTER5_Carp_edema_virus|282|82 PRJNA318414_P_NODE_10_length_15674_cov_109.855034_g8_i0|Carp_edema_virus|NR|1.76e-230|NA 266 81 PRJNA1111146 158345 218 1.024242 2.23284756 Carp edema virus 1653087 Viruses Viruses 46.6 0.000916 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_158345_length_218_cov_1.024242_g157207_i0   BCT22707.1 hypothetical protein [Carp edema virus] BCT22707.1 1653087 g157207 i0 31.1 1.018348624 74 48 99.1 3 3 218 64 136 222 46.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   46.6   0.000916
6731 6731 PRJNA1111146_CONTIG_290571|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_290571|Carp_edema_virus PRJNA1111146_CONTIG_290571 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA1111146 290571 188 3.318519 6.23881572 Carp edema virus 1653087 Viruses Viruses 52.4 6.87e-06 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_290571_length_188_cov_3.318519_g289433_i0   BCT22626.1 putative DNA-binding virion core protein [Carp edema virus] BCT22626.1 1653087 g289433 i0 40.4 0.909574468 57 33 89.4 1 181 14 96 152 171 52.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   52.4   6.87e-06
6733 6733 PRJNA1111146_CONTIG_304589|Carp_edema_virus|CLUSTER6_Carp_edema_virus|274|111 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_304589|Carp_edema_virus PRJNA1111146_CONTIG_304589 Carp edema virus 4680 143 36 CLUSTER6_Carp_edema_virus|274|111 PRJNA1075480_S_NODE_10_length_11763_cov_107.476048_g4_i0|Carp_edema_virus|NR|0|NA 264 107 PRJNA1111146 304589 186 1.473684 2.74105224 Carp edema virus 1653087 Viruses Viruses 63.9 4.56e-10 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_304589_length_186_cov_1.473684_g303451_i0   BCT22622.1 hypothetical protein AL387_gp075 [Carp edema virus] BCT22622.1 1653087 g303451 i0 43.3 0.967741935 60 34 96.8 0 184 5 75 134 180 63.9 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   63.9   4.56e-10
6878 6878 PRJNA1111146_CONTIG_16133|Carp_edema_virus|CLUSTER7_Carp_edema_virus|191|60 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_16133|Carp_edema_virus PRJNA1111146_CONTIG_16133 Carp edema virus 4680 143 36 CLUSTER7_Carp_edema_virus|191|60 PRJNA318414_P_NODE_4_length_21553_cov_145.486805_g3_i0|Carp_edema_virus|NR|0|NA 184 57 PRJNA1111146 16133 402 0.962751 3.87025902 Carp edema virus 1653087 Viruses Viruses 52.4 8.58e-05 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_16133_length_402_cov_0.962751_g14999_i0   BCT22655.1 hypothetical protein [Carp edema virus] BCT22655.1 1653087 g14999 i0 38.6 0.425373134 57 35 42.5 0 64 234 416 472 171 52.4 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   52.4   8.58e-05
7291 7291 PRJNA1111146_CONTIG_134041|Carp_edema_virus|CLUSTER9_Carp_edema_virus|189|53 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_134041|Carp_edema_virus PRJNA1111146_CONTIG_134041 Carp edema virus 4680 143 36 CLUSTER9_Carp_edema_virus|189|53 PRJNA1075480_S_NODE_36_length_9686_cov_68.302923_g23_i0|Carp_edema_virus|NR|9.15e-292|NA 188 53 PRJNA1111146 134041 227 1.505747 3.41804569 Carp edema virus 1653087 Viruses Viruses 83.2 8e-17 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_134041_length_227_cov_1.505747_g132903_i0   BCT22694.1 mRNA capping enzyme small subunit [Carp edema virus] BCT22694.1 1653087 g132903 i0 53.3 0.991189427 75 33 99.1 2 227 3 71 143 225 83.2 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   83.2   8e-17
7660 7660 PRJNA1111146_CONTIG_314097|Carp_edema_virus|CLUSTER11_Carp_edema_virus|185|63 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_314097|Carp_edema_virus PRJNA1111146_CONTIG_314097 Carp edema virus 4680 143 36 CLUSTER11_Carp_edema_virus|185|63 PRJNA318414_P_NODE_13_length_11789_cov_179.829762_g10_i0|Carp_edema_virus|NR|4.62999999998593e-293|NA 184 63 PRJNA1111146 314097 185 0.863636 1.5977266 Carp edema virus 1653087 Viruses Viruses 78.6 4.04e-15 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_314097_length_185_cov_0.863636_g312959_i0   BCT22731.1 mRNA capping enzyme large subunit [Carp edema virus] BCT22731.1 1653087 g312959 i0 68.6 0.827027027 51 16 82.7 0 183 31 837 887 153 78.6 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   78.6   4.04e-15
9756 9756 PRJNA1111146_CONTIG_139515|Carp_edema_virus|CLUSTER29_Carp_edema_virus|34|26 Zebrafish jaw poxvirus Novel PRJNA1111146_CONTIG_139515|Carp_edema_virus PRJNA1111146_CONTIG_139515 Carp edema virus 4680 143 36 CLUSTER29_Carp_edema_virus|34|26 PRJNA1075480_S_NODE_235_length_3688_cov_13.335823_g190_i0|Carp_edema_virus|NR|1.17e-152|NA 34 26 PRJNA1111146 139515 225 1.232558 2.7732555 Carp edema virus 1653087 Viruses Viruses 50.8 1.63e-05 Carp edema virus Non-phage NR PRJNA1111146_P_NODE_139515_length_225_cov_1.232558_g138377_i0   BCT22700.1 hypothetical protein [Carp edema virus] BCT22700.1 1653087 g138377 i0 38.7 1.0 75 34 94.7 2 8 220 33 99 225 50.8 1.0 Viruses Varidnaviria Bamfordvirae Nucleocytoviricota Pokkesviricetes Chitovirales Poxviridae   Carp edema virus Viruses;Varidnaviria;Bamfordvirae;Nucleocytoviricota;Pokkesviricetes;Chitovirales;Poxviridae;Zebrafish jaw poxvirus   Carp edema virus     Viruses   Viruses   50.8   1.63e-05

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;