metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJNA1089179"

4 rows where bioproject = "PRJNA1089179"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
3985	3985	PRJNA1089179_CONTIG_11475\|Cyprivirus_A\|CLUSTER1_Cyprivirus_A\|1164\|220	Zebrafish picornavirus 1	Known	PRJNA1089179_CONTIG_11475\|Cyprivirus_A	PRJNA1089179_CONTIG_11475	Cyprivirus A	1161	220	1	CLUSTER1_Cyprivirus_A\|1164\|220	PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0\|Cyprivirus_A\|NTclustered\|0\|NA	1164	220	PRJNA1089179	11475	277	1.509804	4.18215708	Cyprivirus A	2304617	Viruses	Viruses	427.0	3.6199999999999996e-115	Cyprivirus A	Non-phage	NTclustered	PRJNA1089179_P_NODE_11475_length_277_cov_1.509804_g11457_i0	Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome	gi\|1812398529\|gb\|MN524064.1\|	2563826	g11457	i0	96.512	2.794223827	258	9	93.0	0	20	277	7485	7742	774	427.0	1.0	Viruses	Riboviria	Orthornavirae	Pisuviricota	Pisoniviricetes	Picornavirales	Picornaviridae		Cyprivirus A	Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1	Cyprivirus A	Zebrafish picornavirus 1	gi\|1812398529\|gb\|MN524064.1\|	Viruses	Viruses	Viruses	Viruses	427.0	189.0	3.6199999999999996e-115	2e-53
8037	8037	PRJNA1089179_CONTIG_3297\|Salarius_guttatus_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA1089179_CONTIG_3297\|Salarius_guttatus_piscichuvirus	PRJNA1089179_CONTIG_3297	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA1089179	3297	446	4.080429	18.19871334	Salarius guttatus piscichuvirus	2951531	Viruses	Viruses	100.0	1.82e-21	Salarius guttatus piscichuvirus	Non-phage	NR	PRJNA1089179_P_NODE_3297_length_446_cov_4.080429_g3279_i0	UVF58767.1 MAG: L protein [Salarius guttatus piscichuvirus]	UVF58767.1	2951531	g3279	i0	39.9	1.029147982	153	87	99.6	2	2	445	2	154	459	100.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	Salarius guttatus piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus		Salarius guttatus piscichuvirus			Viruses		Viruses		100.0		1.82e-21
8089	8089	PRJNA1089179_CONTIG_12193\|African_cichlid_piscichuvirus\|CLUSTER1_African_cichlid_piscichuvirus\|150\|125	African cichlid piscichuvirus	Endogenous or not fish-associated	PRJNA1089179_CONTIG_12193\|African_cichlid_piscichuvirus	PRJNA1089179_CONTIG_12193	African cichlid piscichuvirus	151	125	2	CLUSTER1_African_cichlid_piscichuvirus\|150\|125	PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0\|African_cichlid_piscichuvirus\|NR\|2.83e-43\|NA	150	125	PRJNA1089179	12193	270	1.969543	5.3177661	African cichlid piscichuvirus	3065075	Viruses	Viruses	85.1	6.59e-17	African cichlid piscichuvirus	Non-phage	NR	PRJNA1089179_P_NODE_12193_length_270_cov_1.969543_g12175_i0	WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus]	WLN26256.1	3065075	g12175	i0	51.3	0.888888889	80	39	88.9	0	2	241	236	315	240	85.1	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Piscichuvirus	African cichlid piscichuvirus	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus	Insecta	African cichlid piscichuvirus	gi\|2499552039\|ref\|XM_055740911.1\|	Arthropoda	Viruses	Arthropoda	Viruses	52.8	85.1	0.025	6.59e-17
9012	9012	PRJNA1089179_CONTIG_7843\|Chuvivirus\|CLUSTER1_Chuvivirus\|75\|72	Chuvivirus	Endogenous or not fish-associated	PRJNA1089179_CONTIG_7843\|Chuvivirus	PRJNA1089179_CONTIG_7843	Chuvivirus	116	110	4	CLUSTER1_Chuvivirus\|75\|72	PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0\|Chuvivirus\|NR\|1.57e-31\|NA	75	72	PRJNA1089179	7843	321	3.802419	12.20576499	Chuvivirus	2842604	Viruses	Viruses	139.0	2.12e-36	Chuvivirus	Non-phage	NR	PRJNA1089179_P_NODE_7843_length_321_cov_3.802419_g7825_i0	WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1]	WET19887.1	3032433	g7825	i0	64.2	1.981308411	106	38	99.1	0	2	319	249	354	636	139.0	1.0	Viruses	Riboviria	Orthornavirae	Negarnaviricota	Monjiviricetes	Jingchuvirales	Chuviridae	Chuvivirus	Freshwater turtle neural virus 1	Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus		Chuvivirus			Viruses		Viruses		139.0		2.12e-36

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;