RNAquarium Metadata Server
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viruses_fish_associated_curated

8 rows where bioproject = "PRJNA1078753"

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tax_family_NTorNR 2

bioproject 1

  • PRJNA1078753 · 8 ✖
Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
8046 8046 PRJNA1078753_CONTIG_4011|African_cichlid_piscichuvirus|CLUSTER1_African_cichlid_piscichuvirus|150|125 African cichlid piscichuvirus Endogenous or not fish-associated PRJNA1078753_CONTIG_4011|African_cichlid_piscichuvirus PRJNA1078753_CONTIG_4011 African cichlid piscichuvirus 151 125 2 CLUSTER1_African_cichlid_piscichuvirus|150|125 PRJEB66218_P_NODE_16107_length_1017_cov_4.283473_g14250_i0|African_cichlid_piscichuvirus|NR|2.83e-43|NA 150 125 PRJNA1078753 4011 513 2.588636 13.27970268 African cichlid piscichuvirus 3065075 Viruses Viruses 91.7 6.69e-18 African cichlid piscichuvirus Non-phage NR PRJNA1078753_P_NODE_4011_length_513_cov_2.588636_g3817_i0   WLN26256.1 MAG: L protein, partial [African cichlid piscichuvirus] WLN26256.1 3065075 g3817 i0 51.7 0.50877193 87 42 50.9 0 250 510 229 315 261 91.7 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Piscichuvirus African cichlid piscichuvirus Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Piscichuvirus;African cichlid piscichuvirus   African cichlid piscichuvirus     Viruses   Viruses   91.7   6.69e-18
8345 8345 PRJNA1078753_CONTIG_66|rajidapivirus_A1|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_66|rajidapivirus_A1 PRJNA1078753_CONTIG_66 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 66 2497 2.203795 55.02876115 rajidapivirus A1 2116206 Viruses Viruses 58.2 0.000233 rajidapivirus A1 Non-phage NR PRJNA1078753_P_NODE_66_length_2497_cov_2.203795_g48_i0   YP_010797608.1 polyprotein [rajidapivirus A1] YP_010797608.1 2116206 g48 i0 25.7 0.331597918 276 169 29.7 10 766 26 274 542 828 58.2 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Rajidapivirus Rajidapivirus ashaska Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   rajidapivirus A1     Viruses   Viruses   58.2   0.000233
8346 8346 PRJNA1078753_CONTIG_81|Crocidura_lasiura_picornavirus_2|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_81|Crocidura_lasiura_picornavirus_2 PRJNA1078753_CONTIG_81 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 81 2396 5.068015 121.4296394 Crocidura lasiura picornavirus 2 3139481 Viruses Viruses 153.0 4.92e-34 Crocidura lasiura picornavirus 2 Non-phage NR PRJNA1078753_P_NODE_81_length_2396_cov_5.068015_g56_i0   WZI33259.1 MAG: polyprotein [Crocidura lasiura picornavirus 2] WZI33259.1 3139481 g56 i0 25.7 1.011686144 808 508 97.2 28 2328 1 307 1054 2424 153.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Crocidura lasiura picornavirus 2 Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Crocidura lasiura picornavirus 2     Viruses   Viruses   153.0   4.92e-34
8347 8347 PRJNA1078753_CONTIG_93|aichivirus_B3|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_93|aichivirus_B3 PRJNA1078753_CONTIG_93 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 93 2222 3.143788 69.85496936 aichivirus B3 2919880 Viruses Viruses 110.0 1.12e-20 aichivirus B3 Non-phage NR PRJNA1078753_P_NODE_93_length_2222_cov_3.143788_g66_i0   ADG03747.2 polyprotein [aichivirus B3] ADG03747.2 2919880 g66 i0 23.9 1.0180018 754 408 88.3 25 22 1983 644 1331 2262 110.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Kobuvirus Kobuvirus bejaponia Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   aichivirus B3     Viruses   Viruses   110.0   1.12e-20
8357 8357 PRJNA1078753_CONTIG_905|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_905|Coleura_bat_picornavirus PRJNA1078753_CONTIG_905 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 905 982 3.667767 36.01747194 Coleura bat picornavirus 3141868 Viruses Viruses 289.0 2.72e-84 Coleura bat picornavirus Non-phage NR PRJNA1078753_P_NODE_905_length_982_cov_3.667767_g763_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g763 i0 49.8 7.154786151 293 144 88.9 3 982 110 2094 2385 7026 289.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   289.0   2.72e-84
8360 8360 PRJNA1078753_CONTIG_1105|Coleura_bat_picornavirus|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_1105|Coleura_bat_picornavirus PRJNA1078753_CONTIG_1105 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 1105 903 3.660241 33.05197623 Coleura bat picornavirus 3141868 Viruses Viruses 306.0 6.95e-91 Coleura bat picornavirus Non-phage NR PRJNA1078753_P_NODE_1105_length_903_cov_3.660241_g955_i0   XBH24011.1 MAG: polyprotein [Coleura bat picornavirus] XBH24011.1 3141868 g955 i0 53.4 3.973421927 296 130 97.7 6 3 884 1951 2240 3588 306.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales     Coleura bat picornavirus Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Coleura bat picornavirus     Viruses   Viruses   306.0   6.95e-91
8374 8374 PRJNA1078753_CONTIG_4034|Salivirus_A|CLUSTER1_Coleura_bat_picornavirus|100|37 Zebrafish jaw picornavirus Novel PRJNA1078753_CONTIG_4034|Salivirus_A PRJNA1078753_CONTIG_4034 Coleura bat picornavirus 89 37 1 CLUSTER1_Coleura_bat_picornavirus|100|37 PRJNA670521_P_NODE_5_length_8668_cov_14.621640_g3_i0|Kobuvirus|NR|2.54e-153|NA 93 37 PRJNA1078753 4034 512 6.168565 31.5830528 Salivirus A 1330524 Viruses Viruses 60.1 5.84e-07 Salivirus A Non-phage NR PRJNA1078753_P_NODE_4034_length_512_cov_6.168565_g3840_i0   QJX58422.1 polyprotein [Salivirus A] QJX58422.1 1330524 g3840 i0 41.9 2.16796875 74 42 42.8 1 3 221 2286 2359 1110 60.1 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae Salivirus Salivirus aklasse Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Kobuvirus;Zebrafish jaw picornavirus   Salivirus A     Viruses   Viruses   60.1   5.84e-07
9026 9026 PRJNA1078753_CONTIG_13256|Chuvivirus|CLUSTER1_Chuvivirus|75|72 Chuvivirus Endogenous or not fish-associated PRJNA1078753_CONTIG_13256|Chuvivirus PRJNA1078753_CONTIG_13256 Chuvivirus 116 110 4 CLUSTER1_Chuvivirus|75|72 PRJNA154389_P_NODE_886_length_652_cov_2.029268_g749_i0|Chuvivirus|NR|1.57e-31|NA 75 72 PRJNA1078753 13256 321 1.495968 4.80205728 Chuvivirus 2842604 Viruses Viruses 131.0 1.17e-33 Chuvivirus Non-phage NR PRJNA1078753_P_NODE_13256_length_321_cov_1.495968_g13060_i0   WET19887.1 MAG: nucleoprotein [Freshwater turtle neural virus 1] WET19887.1 3032433 g13060 i0 64.2 1.981308411 106 38 99.1 0 2 319 243 348 636 131.0 1.0 Viruses Riboviria Orthornavirae Negarnaviricota Monjiviricetes Jingchuvirales Chuviridae Chuvivirus Freshwater turtle neural virus 1 Viruses;Riboviria;Orthornavirae;Negarnaviricota;Monjiviricetes;Jingchuvirales;Chuviridae;Chuvivirus   Chuvivirus     Viruses   Viruses   131.0   1.17e-33

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;