metadata: viruses_fish_associated_curated: 2 rows where bioproject = "PRJNA1057153"

2 rows where bioproject = "PRJNA1057153"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	lowcoverage_flag	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	gapopen_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_genus_NTorNR	tax_species_NTorNR	classification	taxname_lca_NTclustered	taxname_lca_NR	target_NTclustered	taxoncategory_NTclustered	taxoncategory_NR	taxoncategorysimple_NTclustered	taxoncategorysimple_NR	bits_NTclustered	bits_NR	evalue_NTclustered	evalue_NR
9392	9392	PRJNA1057153_CONTIG_22494\|Pimephales_minnow_adintovirus\|CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJNA1057153_CONTIG_22494\|Pimephales_minnow_adintovirus	PRJNA1057153_CONTIG_22494	Pimephales minnow adintovirus	168	104	20	CLUSTER1_Pimephales_minnow_adintovirus\|59\|59	PRJNA551453_P_NODE_4881_length_284_cov_1.883117_g4799_i0\|Pimephales_minnow_adintovirus\|NR\|1.25e-07\|NA	52	52	PRJNA1057153	22494	162	12.285714	19.90285668	Pimephales minnow adintovirus	2609864	Viruses	Viruses	56.2	1.35e-07	Pimephales minnow adintovirus	Non-phage	NR	PRJNA1057153_S_NODE_22494_length_162_cov_12.285714_g22339_i0		DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g22339	i0	68.6	0.648148148	35	11	64.8	0	106	2	7	41	105	56.2	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus		Pimephales minnow adintovirus			Viruses		Viruses		56.2		1.35e-07
10135	10135	PRJNA1057153_CONTIG_16964\|Astyanax_tetra_cavefish_adintovirus\|CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	Astyanax tetra cavefish adintovirus	Insufficient Evidence	PRJNA1057153_CONTIG_16964\|Astyanax_tetra_cavefish_adintovirus	PRJNA1057153_CONTIG_16964	Astyanax tetra cavefish adintovirus	22	15	8	CLUSTER1_Astyanax_tetra_cavefish_adintovirus\|7\|6	PRJNA1150539_S_NODE_13470_length_412_cov_4.790560_g12875_i0\|Polintoviricetes\|NR\|4.65e-24\|NA	7	6	PRJNA1057153	16964	179	1.382353	2.47441187	Astyanax tetra cavefish adintovirus	2609866	Viruses	Viruses	55.5	3.07e-07	Astyanax tetra cavefish adintovirus	Non-phage	NR	PRJNA1057153_S_NODE_16964_length_179_cov_1.382353_g16809_i0		DAC81259.1 TPA_asm: FtsK [Astyanax tetra cavefish adintovirus]	DAC81259.1	2609866	g16809	i0	80.0	0.502793296	30	6	50.3	0	1	90	191	220	90	55.5	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae		Astyanax tetra cavefish adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Astyanax tetra cavefish adintovirus		Astyanax tetra cavefish adintovirus			Viruses		Viruses		55.5		3.07e-07

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;