RNAquarium Metadata Server
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viruses_fish_associated_curated

7 rows where bioproject = "PRJNA1002816" and clusterLCA_curated = "Zebrafish picornavirus 1"

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tax_species_NTorNR 1

tax_family_NTorNR 1

clusterLCA_curated 1

  • Zebrafish picornavirus 1 · 7 ✖

bioproject 1

  • PRJNA1002816 · 7 ✖

Category 1

tax_genus_NTorNR 0

Link rowid ▼ contig_withLCA_withcluster clusterLCA_curated Category contig_withLCA shortcontigname clusterLCA clusterLCAcurated_contigcount clusterLCAcurated_bioprojectcount clusterLCAcurated_clustercount shortclustername cluster clustersize bioprojectsbycluster bioproject node length coverage rel_abundance taxname_lca_NTorNR taxid_lca_NTorNR taxoncategory_NTorNR taxoncategorysimple_NTorNR bits_NTorNR evalue_NTorNR viruscategory_NTorNR viruscategorysimple_NTorNR analysis_used contig_name lowcoverage_flag target_title_NTorNR target_NTorNR taxid_NTorNR gene_NTorNR allele_NTorNR pident_NTorNR sumperc_cov_NTorNR alnlen_NTorNR mismatch_NTorNR qcov_NTorNR gapopen_NTorNR qstart_NTorNR qend_NTorNR tstart_NTorNR tend_NTorNR sumalnlen_NTorNR maxbits_NTorNR bits_percmax_NTorNR tax_superkingdom_NTorNR tax_clade_NTorNR tax_kingdom_NTorNR tax_phylum_NTorNR tax_class_NTorNR tax_order_NTorNR tax_family_NTorNR tax_genus_NTorNR tax_species_NTorNR classification taxname_lca_NTclustered taxname_lca_NR target_NTclustered taxoncategory_NTclustered taxoncategory_NR taxoncategorysimple_NTclustered taxoncategorysimple_NR bits_NTclustered bits_NR evalue_NTclustered evalue_NR
3611 3611 PRJNA1002816_CONTIG_2651|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_2651|Cyprivirus_A PRJNA1002816_CONTIG_2651 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 2651 700 1.14992 8.04944 Cyprivirus A 2304617 Viruses Viruses 1062.0 0.0 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_2651_length_700_cov_1.149920_g2498_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g2498 i0 94.126 2.992857143 698 41 99.0 0 3 700 5702 5005 2095 1062.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 1062.0 422.0 0.0 2.5500000000000003e-132
3836 3836 PRJNA1002816_CONTIG_6596|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_6596|Cyprivirus_A PRJNA1002816_CONTIG_6596 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 6596 442 1.284553 5.67772426 Cyprivirus A 2304617 Viruses Viruses 765.0 0.0 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_6596_length_442_cov_1.284553_g6436_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g6436 i0 98.174 2.972850679 438 8 99.0 0 3 440 6533 6096 1314 765.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 765.0 285.0 0.0 5.9e-86
3972 3972 PRJNA1002816_CONTIG_11038|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_11038|Cyprivirus_A PRJNA1002816_CONTIG_11038 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 11038 335 1.129771 3.78473285 Cyprivirus A 2304617 Viruses Viruses 603.0 6.949999999999999e-168 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_11038_length_335_cov_1.129771_g10878_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g10878 i0 99.104 3.0 335 3 100.0 0 1 335 262 596 1005 603.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A   gi|2500378199|ref|NC_076245.1| Viruses   Viruses   603.0   6.949999999999999e-168  
4020 4020 PRJNA1002816_CONTIG_13044|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_13044|Cyprivirus_A PRJNA1002816_CONTIG_13044 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 13044 306 1.609442 4.92489252 Cyprivirus A 2304617 Viruses Viruses 507.0 5.07e-139 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_13044_length_306_cov_1.609442_g12884_i0   TPA_asm: Zebrafish picornavirus 1 strain NCSZCF/ZfPV/2015/North Carolina/USA, complete genome gi|1990739381|tpg|BK011179.1| 2563826 g12884 i0 96.711 2.980392157 304 10 99.0 0 1 304 7503 7806 912 507.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1990739381|tpg|BK011179.1| Viruses Viruses Viruses Viruses 507.0 220.0 5.07e-139 4.88e-64
4035 4035 PRJNA1002816_CONTIG_13694|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_13694|Cyprivirus_A PRJNA1002816_CONTIG_13694 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 13694 297 1.03125 3.0628125 Cyprivirus A 2304617 Viruses Viruses 505.0 1.7599999999999998e-138 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_13694_length_297_cov_1.031250_g13534_i0   Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome gi|1812398529|gb|MN524064.1| 2563826 g13534 i0 97.306 3.0 297 8 100.0 0 1 297 6521 6817 891 505.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1812398529|gb|MN524064.1| Viruses Viruses Viruses Viruses 505.0 202.0 1.7599999999999998e-138 9.23e-58
4097 4097 PRJNA1002816_CONTIG_17079|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_17079|Cyprivirus_A PRJNA1002816_CONTIG_17079 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 17079 255 2.027473 5.17005615 Cyprivirus A 2304617 Viruses Viruses 455.0 1.51e-123 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_17079_length_255_cov_2.027473_g16919_i0   Zebrafish picornavirus 1 isolate CZAR/ZfPV/2018/Utah/USA, complete genome gi|1812398529|gb|MN524064.1| 2563826 g16919 i0 98.824 3.0 255 3 100.0 0 1 255 5766 6020 765 455.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|1812398529|gb|MN524064.1| Viruses Viruses Viruses Viruses 455.0 175.0 1.51e-123 1.0599999999999999e-48
4129 4129 PRJNA1002816_CONTIG_19694|Cyprivirus_A|CLUSTER1_Cyprivirus_A|1164|220 Zebrafish picornavirus 1 Known PRJNA1002816_CONTIG_19694|Cyprivirus_A PRJNA1002816_CONTIG_19694 Cyprivirus A 1161 220 1 CLUSTER1_Cyprivirus_A|1164|220 PRJNA561212_P_NODE_3_length_8346_cov_49.070712_g2_i0|Cyprivirus_A|NTclustered|0|NA 1164 220 PRJNA1002816 19694 244 1.350877 3.29613988 Cyprivirus A 2304617 Viruses Viruses 368.0 1.92e-97 Cyprivirus A Non-phage NTclustered PRJNA1002816_P_NODE_19694_length_244_cov_1.350877_g19534_i0   Zebrafish picornavirus 1 strain IDEXX/ZfPV-1/2017/USA, complete genome gi|2500378199|ref|NC_076245.1| 2563826 g19534 i0 93.852 2.963114754 244 15 100.0 0 1 244 5473 5230 723 368.0 1.0 Viruses Riboviria Orthornavirae Pisuviricota Pisoniviricetes Picornavirales Picornaviridae   Cyprivirus A Viruses;Riboviria;Orthornavirae;Pisuviricota;Pisoniviricetes;Picornavirales;Picornaviridae;Zebrafish picornavirus 1 Cyprivirus A Zebrafish picornavirus 1 gi|2500378199|ref|NC_076245.1| Viruses Viruses Viruses Viruses 368.0 141.0 1.92e-97 9e-37

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;