metadata: viruses_fish_associated_curated: 4 rows where bioproject = "PRJEB673"

4 rows where bioproject = "PRJEB673"

descending

Link	rowid ▼	contig_withLCA_withcluster	clusterLCA_curated	Category	contig_withLCA	shortcontigname	clusterLCA	clusterLCAcurated_contigcount	clusterLCAcurated_bioprojectcount	clusterLCAcurated_clustercount	shortclustername	cluster	clustersize	bioprojectsbycluster	bioproject	node	length	coverage	rel_abundance	taxname_lca_NTorNR	taxid_lca_NTorNR	taxoncategory_NTorNR	taxoncategorysimple_NTorNR	bits_NTorNR	evalue_NTorNR	viruscategory_NTorNR	viruscategorysimple_NTorNR	analysis_used	contig_name	target_title_NTorNR	target_NTorNR	taxid_NTorNR	gene_NTorNR	allele_NTorNR	pident_NTorNR	sumperc_cov_NTorNR	alnlen_NTorNR	mismatch_NTorNR	qcov_NTorNR	qstart_NTorNR	qend_NTorNR	tstart_NTorNR	tend_NTorNR	sumalnlen_NTorNR	maxbits_NTorNR	bits_percmax_NTorNR	tax_superkingdom_NTorNR	tax_clade_NTorNR	tax_kingdom_NTorNR	tax_phylum_NTorNR	tax_class_NTorNR	tax_order_NTorNR	tax_family_NTorNR	tax_species_NTorNR	classification	taxname_lca_NR	taxoncategory_NR	taxoncategorysimple_NR	bits_NR	evalue_NR
9920	9920	PRJEB673_CONTIG_8874\|Pimephales_minnow_adintovirus\|CLUSTER5_Pimephales_minnow_adintovirus\|15\|11	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJEB673_CONTIG_8874\|Pimephales_minnow_adintovirus	PRJEB673_CONTIG_8874	Pimephales minnow adintovirus	168	104	20	CLUSTER5_Pimephales_minnow_adintovirus\|15\|11	PRJNA745923_S_NODE_10260_length_324_cov_1.163701_g9928_i0\|Pimephales_minnow_adintovirus\|NR\|6.57e-29\|NA	15	11	PRJEB673	8874	229	1.201031	2.75036099	Pimephales minnow adintovirus	2609864	Viruses	Viruses	74.3	5.33e-14	Pimephales minnow adintovirus	Non-phage	NR	PRJEB673_P_NODE_8874_length_229_cov_1.201031_g8525_i0	DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g8525	i0	55.3	0.995633188	76	34	99.6	228	1	58	133	228	74.3	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus	Pimephales minnow adintovirus	Viruses	Viruses	74.3	5.33e-14
10083	10083	PRJEB673_CONTIG_11040\|Pimephales_minnow_adintovirus\|CLUSTER6_Pimephales_minnow_adintovirus\|10\|9	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJEB673_CONTIG_11040\|Pimephales_minnow_adintovirus	PRJEB673_CONTIG_11040	Pimephales minnow adintovirus	168	104	20	CLUSTER6_Pimephales_minnow_adintovirus\|10\|9	PRJEB66218_P_NODE_83127_length_345_cov_0.922535_g80700_i0\|Pimephales_minnow_adintovirus\|NR\|3.45e-17\|NA	10	9	PRJEB673	11040	165	3.907692	6.4476918	Pimephales minnow adintovirus	2609864	Viruses	Viruses	52.4	7.05e-07	Pimephales minnow adintovirus	Non-phage	NR	PRJEB673_P_NODE_11040_length_165_cov_3.907692_g10691_i0	DAC81395.1 TPA_asm: gasderminX [Pimephales minnow adintovirus]	DAC81395.1	2609864	g10691	i0	62.3	0.963636364	53	20	96.4	161	3	1	53	159	52.4	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus	Pimephales minnow adintovirus	Viruses	Viruses	52.4	7.05e-07
10084	10084	PRJEB673_CONTIG_12357\|Pimephales_minnow_adintovirus\|CLUSTER6_Pimephales_minnow_adintovirus\|10\|9	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJEB673_CONTIG_12357\|Pimephales_minnow_adintovirus	PRJEB673_CONTIG_12357	Pimephales minnow adintovirus	168	104	20	CLUSTER6_Pimephales_minnow_adintovirus\|10\|9	PRJEB66218_P_NODE_83127_length_345_cov_0.922535_g80700_i0\|Pimephales_minnow_adintovirus\|NR\|3.45e-17\|NA	10	9	PRJEB673	12357	154	1.462185	2.2517649	Pimephales minnow adintovirus	2609864	Viruses	Viruses	67.0	1.14e-11	Pimephales minnow adintovirus	Non-phage	NR	PRJEB673_P_NODE_12357_length_154_cov_1.462185_g12008_i0	DAC81394.1 TPA_asm: FtsK [Pimephales minnow adintovirus]	DAC81394.1	2609864	g12008	i0	65.3	0.954545455	49	17	95.5	2	148	164	212	147	67.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus	Pimephales minnow adintovirus	Viruses	Viruses	67.0	1.14e-11
10164	10164	PRJEB673_CONTIG_3515\|Pimephales_minnow_adintovirus\|CLUSTER7_Pimephales_minnow_adintovirus\|5\|5	Pimephales minnow adintovirus	Endogenous or not fish-associated	PRJEB673_CONTIG_3515\|Pimephales_minnow_adintovirus	PRJEB673_CONTIG_3515	Pimephales minnow adintovirus	168	104	20	CLUSTER7_Pimephales_minnow_adintovirus\|5\|5	PRJEB673_P_NODE_3515_length_532_cov_2.076459_g3194_i0\|Pimephales_minnow_adintovirus\|NR\|1.09e-50\|NA	4	4	PRJEB673	3515	532	2.076459	11.04676188	Pimephales minnow adintovirus	2609864	Viruses	Viruses	176.0	1.09e-50	Pimephales minnow adintovirus	Non-phage	NR	PRJEB673_P_NODE_3515_length_532_cov_2.076459_g3194_i0	DAC81401.1 TPA_asm: integrase [Pimephales minnow adintovirus]	DAC81401.1	2609864	g3194	i0	67.1	0.806390977	143	47	80.6	102	530	1	143	429	176.0	1.0	Viruses	Varidnaviria	Bamfordvirae	Preplasmiviricota	Polintoviricetes	Orthopolintovirales	Adintoviridae	Pimephales minnow adintovirus	Viruses;Varidnaviria;Bamfordvirae;Preplasmiviricota;Polintoviricetes;Orthopolintovirales;Adintoviridae;Pimephales minnow adintovirus	Pimephales minnow adintovirus	Viruses	Viruses	176.0	1.09e-50

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CREATE TABLE viruses_fish_associated_curated(contig_withLCA_withcluster VARCHAR, clusterLCA_curated VARCHAR, Category VARCHAR, contig_withLCA VARCHAR, shortcontigname VARCHAR, clusterLCA VARCHAR, clusterLCAcurated_contigcount BIGINT, clusterLCAcurated_bioprojectcount BIGINT, clusterLCAcurated_clustercount BIGINT, shortclustername VARCHAR, "cluster" VARCHAR, clustersize BIGINT, bioprojectsbycluster BIGINT, bioproject VARCHAR, node BIGINT, length BIGINT, coverage DOUBLE, rel_abundance DOUBLE, taxname_lca_NTorNR VARCHAR, taxid_lca_NTorNR BIGINT, taxoncategory_NTorNR VARCHAR, taxoncategorysimple_NTorNR VARCHAR, bits_NTorNR DOUBLE, evalue_NTorNR DOUBLE, viruscategory_NTorNR VARCHAR, viruscategorysimple_NTorNR VARCHAR, analysis_used VARCHAR, contig_name VARCHAR, lowcoverage_flag DOUBLE, target_title_NTorNR VARCHAR, target_NTorNR VARCHAR, taxid_NTorNR BIGINT, gene_NTorNR VARCHAR, allele_NTorNR VARCHAR, pident_NTorNR DOUBLE, sumperc_cov_NTorNR DOUBLE, alnlen_NTorNR BIGINT, mismatch_NTorNR BIGINT, qcov_NTorNR DOUBLE, gapopen_NTorNR BIGINT, qstart_NTorNR BIGINT, qend_NTorNR BIGINT, tstart_NTorNR BIGINT, tend_NTorNR BIGINT, sumalnlen_NTorNR BIGINT, maxbits_NTorNR DOUBLE, bits_percmax_NTorNR DOUBLE, tax_superkingdom_NTorNR VARCHAR, tax_clade_NTorNR VARCHAR, tax_kingdom_NTorNR VARCHAR, tax_phylum_NTorNR VARCHAR, tax_class_NTorNR VARCHAR, tax_order_NTorNR VARCHAR, tax_family_NTorNR VARCHAR, tax_genus_NTorNR VARCHAR, tax_species_NTorNR VARCHAR, classification VARCHAR, taxname_lca_NTclustered VARCHAR, taxname_lca_NR VARCHAR, target_NTclustered VARCHAR, taxoncategory_NTclustered VARCHAR, taxoncategory_NR VARCHAR, taxoncategorysimple_NTclustered VARCHAR, taxoncategorysimple_NR VARCHAR, bits_NTclustered DOUBLE, bits_NR DOUBLE, evalue_NTclustered DOUBLE, evalue_NR DOUBLE);;
CREATE INDEX idx_vfac_bioproject ON viruses_fish_associated_curated(bioproject);;
CREATE INDEX idx_vfac_category ON viruses_fish_associated_curated(Category);;
CREATE INDEX idx_vfac_clusterLCA_curated ON viruses_fish_associated_curated(clusterLCA_curated);;
CREATE INDEX idx_vfac_tax_family ON viruses_fish_associated_curated(tax_family_NTorNR);;
CREATE INDEX idx_vfac_tax_genus ON viruses_fish_associated_curated(tax_genus_NTorNR);;
CREATE INDEX idx_vfac_tax_species ON viruses_fish_associated_curated(tax_species_NTorNR);;